| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,293,260 | G→T | intergenic (‑338/‑267) | hns ← / → tdk | DNA‑binding transcriptional dual regulator H‑NS/thymidine/deoxyuridine kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,293,260 | 0 | G | T | 100.0% | 63.8 / NA | 19 | intergenic (‑338/‑267) | hns/tdk | DNA‑binding transcriptional dual regulator H‑NS/thymidine/deoxyuridine kinase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (14/5); total (14/5) | |||||||||||
AGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCAACAGGTTAAAGATTGTGAAT > NC_000913/1293185‑1293337 | aGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGATCATg > 2:251046/1‑80 (MQ=255) gTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGATCATGGa > 2:251049/1‑81 (MQ=255) tctGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGATCATGGACt > 2:251048/1‑79 (MQ=255) tATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGATCATGGACTTAGTAt < 1:251029/81‑1 (MQ=255) tgtgTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGATCATGGACTTAGTATTGCACTa > 2:251056/1‑81 (MQ=255) tACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGATCATGGACTTAGTATTGCACTATCTCCt > 2:251052/1‑81 (MQ=255) ttCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGATCATGGACTTAGTATTGCACTATCTCCTGGAGGTc > 2:251054/1‑80 (MQ=255) gCGAATGATGAAAAGTAGAACAGTCGCAATAAGATCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTa > 2:251061/1‑81 (MQ=255) gCGAATGATGAAAAGTAGAACAGTCGCAATAAGATCATGGACATAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTa < 2:251030/81‑1 (MQ=255) gAATGATGAAAAGTAGAACAGTCGCAATAAGATCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTAt > 2:251065/1‑80 (MQ=255) aaTGATGAAAAGTAGAACAGTCGCAATAAGATCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTa > 2:251060/1‑81 (MQ=255) atgaAAAGTAGAACAGTCGCAATAAGATCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTg > 1:251053/1‑81 (MQ=255) aGTAGAACAGTCGCAATAAGATCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCAAc < 2:251032/81‑1 (MQ=255) aGTAGAACAGTCGCAATAAGATCATGGACTTAGTATTGCACTATCCCCTGGAGGTCAACAGAGGGCTATTACTTGCGCaa > 1:251058/1‑80 (MQ=255) aaCAGTCGCAATAAGATCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCAACAGGtt < 2:251033/81‑1 (MQ=255) aaCAGTCGCAATAAGATCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCAACAGGt > 2:251063/1‑80 (MQ=255) gTCGCAATAAGATCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCAACAGGTTAAAg < 2:251034/81‑1 (MQ=255) tCGCAATAAGATCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCAACAGGTTa > 1:251057/1‑77 (MQ=255) gCAATAAGATCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCAACAGGTTAAAGAtt > 1:251067/1‑81 (MQ=255) agatCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCAACAGGTTAAAGATTGTGAAt < 2:251035/81‑1 (MQ=255) | AGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCAACAGGTTAAAGATTGTGAAT > NC_000913/1293185‑1293337 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |