| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,649,811 | G→A | V6V (GTG→GTA) | ydfD → | Qin prophage; lysis protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,649,811 | 0 | G | A | 100.0% | 42.1 / NA | 13 | V6V (GTG→GTA) | ydfD | Qin prophage; lysis protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (5/8); total (5/8) | |||||||||||
AAATATGCATTGTTTCAATGCTGGCTCGTTTACGTCTGATGCCAAAAGGATGTGCACAATGAATTCAGCATTTGTGCTTGTTCTGACAGTTTTTCTTGTTTCCGGAGAGCCAGTTGATATTGCAGTCAGTGTTCACAGGACAATG > NC_000913/1649736‑1649880 | aaataTGCATTGTTTCAATGCTGGCTCGTTTACGTCTGATGCCAAAAGGATGTGCACAATGAATTCAGCATTTGTACTTg < 2:300009/80‑1 (MQ=255) atGCATTGTTTCAATGCTGGCTCGTTTACGTCTGATGCCAAAAGGATGTGCACAATGAATTCAGCATTTGTACTTGTTCt > 2:300010/1‑80 (MQ=255) gTTTCAATGCTGGCTCGTTTACGTCTGATGCCAAAAGGATGTGCACAATGAATTCAGCATTTGTACTTGTTCTGACAGttt > 1:300034/1‑81 (MQ=255) tCAATGCTGGCTCGTTTACGTCTGATGCCAAAAGGATGTGCACAATGAATTCAGCATTTGTACTTGTTCTGACAGTTTTTc > 2:300029/1‑81 (MQ=255) cTGGCTCGTTTACGTCTGATGCCAAAAGGATGTGCACAATGAATTCAGCATTTGTACTTGTTCTGACAGTTTTTCTTGtt < 2:300011/80‑1 (MQ=255) ggCTCGTTTACGTCTGATGCCAAAAGGATGTGCACAATGAATTCAGCATTTGTACTTGTTCTGACAGTTTTTCTTGTTTcc > 1:300038/1‑81 (MQ=255) gCTCGTTTACGTCTGATGCCAAAAGGATGTGCACAATGAATTCAGCATTTGTACTTGTTCTGACAGTTTTTCTTGTTTcc < 1:300012/80‑1 (MQ=255) gCTCGTTTACGTCTGATGCCAAAAGGATGTGCACAATGAATTCAGCATTTGTACTTGTTCTGACAGTTTTTCTTGTTTcc < 2:300013/80‑1 (MQ=255) gTTTACGTCTGATGCCAAAAGGATGTGCACAATGAATTCAGCATTTGTACTTGTTCTGACAGTTTTTCTTGTTTCCGgag < 2:300014/80‑1 (MQ=255) tCTGATGCCAAAAGGATGTGCACAATGAATTCAGCATTTGTACTTGTTCTGACAGTTTTTCTTGTTTCCGGAGAGCCAGtt < 2:300015/81‑1 (MQ=255) cAAAAGGATGTGCACAATGAATTCAGCATTTGTACTTGTTCTGACAGTTTTTCTTGTTTCCGGAGAGCCAGTTGATATTGc < 2:300016/81‑1 (MQ=255) aaTTCAGCATTTGTACTTGTTCTGACAGTTTTTCTTGTTTCCGGAGAGCCAGTTGATATTGCAGTCAGTGTTCACAGGAc < 1:300017/80‑1 (MQ=255) cAGCATTTGTACTTGTTCTGACAGTTTTTCTTGTTTCCGGAGAGCCAGTTGATATTGCAGTCAGTGTTCACAGGACAATg > 1:300045/1‑80 (MQ=255) | AAATATGCATTGTTTCAATGCTGGCTCGTTTACGTCTGATGCCAAAAGGATGTGCACAATGAATTCAGCATTTGTGCTTGTTCTGACAGTTTTTCTTGTTTCCGGAGAGCCAGTTGATATTGCAGTCAGTGTTCACAGGACAATG > NC_000913/1649736‑1649880 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |