| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,652,682 | C→T | pseudogene (1171/1197 nt) | intQ → | Qin prophage; putative defective integrase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,652,682 | 0 | C | T | 100.0% | 46.6 / NA | 14 | pseudogene (1171/1197 nt) | intQ | Qin prophage; putative defective integrase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (5/9); total (5/9) | |||||||||||
AAAATGGATGTCTGAAAACAATAATGCACAGGTAGCTTTGTTAAATACACAGTTAAGCGAGTTTGCCCCAACCATGCCCCATAACGAAGCAATGAAAAATTAATTTAATATTTATCAAATAGTTAACACGCATGACTCTTGAAATCCATAAATT > NC_000913/1652606‑1652759 | aaaaTGGATGTCTGAAAACAATAATGCACAGGTAGCTTTGTTAAATACACAGTTAAGCGAGTTTGCCCCAACCATGTCCCa < 2:300373/81‑1 (MQ=255) tCTGAAAACAATAATGCACAGGTAGCTTTGTTAAATACACAGTTAAGCGAGTTTGCCCCAACCATGTCCCATAACGAAGc > 2:300390/1‑80 (MQ=255) aaaaCAATAATGCACAGGTAGCTTTGTTAAATACACAGTTAAGCGAGTTTGCCCCAACCATGTCCCATAACGAAGCAAt < 1:300374/79‑1 (MQ=255) aaaaCAATAATGCACAGGTAGCTTTGTTAAATACACAGTTAAGCGAGTTTGCCCCAACCATGTCCCATAACGAAGCAAt < 2:300375/79‑1 (MQ=255) aaaaCAATAATGCACAGGTAGCTTTGTTAAATACACAGTTAAGCGAGTTTGCCCCAACCATGTCCCATAACGAAGCAATg < 1:300376/80‑1 (MQ=255) aaCAATAATGCACAGGTAGCTTTGTTAAATACACAGTTAAGCGAGTTTGCCCCAACCATGTCCCATAACGAAGCAATGaaa < 1:300377/81‑1 (MQ=255) aCAATAATGCACAGGTAGCTTTGTTAAATACACAGTTAAGCGAGTTTGCCCCAACCATGTCCCATAACGAAGCAATGaaaa < 1:300378/81‑1 (MQ=255) aGGTAGCTTTGTTAAATACACAGTTAAGCGAGTTTGCCCCAACCATGTCCCATAACGAAGCAATGAAAAATTAATTTAata > 2:300386/1‑81 (MQ=255) cTTTGTTAAATACACAGTTAAGCGAGTTTGCCCCAACCATGTCCCATAACGAAGCAATGAAAAATTAATTTAATATTTATc < 1:300379/81‑1 (MQ=255) tAAATACACAGTTAAGCGAGTTTGCCCCAACCATGTCCCATAACGAAGCAATGAAAAACTAATTTAATATTTATCAAATAg > 1:300394/1‑81 (MQ=255) gAGTTTGCCCCAACCATGTCCCATAACGAAGCAATGAAAAATTAATTTAATATTTATCAAATAGTTAACACGCATGActct > 1:300396/1‑81 (MQ=255) gAGTTTGCCCCAACCATGTCCCATAACGAAGCAATGAAAAATTAATTTAATATTTATCAAATAGTTAACACGCATGActct > 1:300403/1‑81 (MQ=255) aTGTCCCATAACGAAGCAATGAAAAATTAATTTAATATTTATCAAATAGTTAACACGCATGACTCTTGAAATCCATAAAtt < 1:300381/81‑1 (MQ=255) aTGTCCCATAACGAAGCAATGAAAAATTAATTTAATATTTATCAAATAGTTAACACGCATGACTCTTGAAATCCATAAAtt < 2:300380/81‑1 (MQ=255) | AAAATGGATGTCTGAAAACAATAATGCACAGGTAGCTTTGTTAAATACACAGTTAAGCGAGTTTGCCCCAACCATGCCCCATAACGAAGCAATGAAAAATTAATTTAATATTTATCAAATAGTTAACACGCATGACTCTTGAAATCCATAAATT > NC_000913/1652606‑1652759 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |