| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,729,349 | T→C | I88T (ATC→ACC) | lhr → | putative ATP‑dependent helicase Lhr |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,729,349 | 0 | T | C | 100.0% | 56.5 / NA | 17 | I88T (ATC→ACC) | lhr | putative ATP‑dependent helicase Lhr |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (11/6); total (11/6) | |||||||||||
CTCTACGCCCTCGATCGGCTCTTCCGCGAAGGCGGCGAAGATACCCGCGAGGCGCATAAGCGTAAAACCTCACGCATCCTCTATATTTCACCGATAAAAGCCCTGGGCACCGACGTTCAGCGCAACTTGCAGATCCCGTTGAAGGGTATTGCC > NC_000913/1729273‑1729425 | ctctACGCCCTCGATCGGCTCTTCCGCGAAGGCGGCGAAGATACCCGCGAGGCGCATAAGCGTAAAACCTCACGCACCctc > 1:310819/1‑81 (MQ=255) tCGATCGGCTCTTCCGCGAAGGCGGCGAAGATACCCGCGAGGCGCATAAGCGTAAAACCTCACGCACCCTCTATATTTCAc > 2:310821/1‑81 (MQ=255) ggCTCTTCCGCGAAGGCGGCGAAGATACCCGCGAGGCGCATAAGCGTAAAACCTCACGCACCCTCTATATTTCACCGATa > 2:310824/1‑80 (MQ=255) ccGCGAAGGCGGCGAAGATACCCGCGAGGCGCATAAGCGTAAAACCTCACGCACCCTCTATATTTCACCGATAAAAGccc < 1:310799/80‑1 (MQ=255) gAAGGCGGCGAAGATACCCGCGAGGCGCATAAGCGTAAAACCTCACGCACCCTCTATATTTCACCGATAAAAGCCCTggg > 1:310818/1‑80 (MQ=255) aaGGCGGCGAAGATACCCGCGAGGCGCATAAGCGTAAAACCTCACGCACCCTCTATATTTCACCGATAAAAGCCCTGGGCa > 1:310816/1‑81 (MQ=255) aaGGCGGCGAAGATACCCGCGAGGCGCATAAGCGTAAAACCTCACGCACCCTCTATATTTCACCGATAAAAGCCCTGGGCa > 2:310810/1‑81 (MQ=255) ggcggcGAAGATACCCGCGAGGCGCATAAGCGTAAAACCTCACGCACCCTCTATATTTCACCGATAAAAGCCCTGGGCAcc < 2:310800/81‑1 (MQ=255) ggcgAAGATACCCGCGAGGCGCATAAGCGTAAAACCTCACGCACCCTCTATATTTCACCGATAAAAGCCCTGGGCACCGAc > 1:310825/1‑81 (MQ=255) ggcgAAGATACCCGCGAGGCGCATAAGCGTAAAACCTCACGCACCCTCTATATTTCACCGATAAAAGCCCTGGGCACCGAc < 2:310801/81‑1 (MQ=255) aTACCCGCGAGGCGCATAAGCGTAAAACCTCACGCACCCTCTATATTTCACCGATAAAAGCCCTGGGCACCGACGTTCAgc < 2:310802/81‑1 (MQ=255) gAGGCGCATAAGCGTAAAACCTCACGCACCCTCTATATTTCACCGATAAAAGCCCTGGGCACCGACGTTCAGCGCAACTTg < 1:310803/81‑1 (MQ=255) cATAAGCGTAAAACCTCACGCACCCTCTATATTTCACCGATAAAAGCCCTGGGCACCGACGTTCAGCGCAACTTGCAGATc > 1:310817/1‑81 (MQ=255) aaGCGTAAAACCTCACGCACCCTCTATATTTCACCGATAAAAGCCCTGGGCACCGACGTTCAGCGCAACTTGCAGATCCCg > 2:310828/1‑81 (MQ=255) aCCTCACGCACCCTCTATATTTCACCGATAAAAGCCCTGGGCACCGACGTTCAGCGCAACTTGCAGATCCCGTTGAAGGGt < 1:310804/81‑1 (MQ=255) cTCACGCACCCTCTATATTTCACCGATAAAAGCCCTGGGCACCGACGTTCAGCGCAACTTGCAGATCCCGTTGAAGGGTAt > 2:310830/1‑81 (MQ=255) gCACCCTCTATATTTCACCGATAAAAGCCCTGGGCACCGACGTTCAGCGCAACTTGCAGATCCCGTTGAAGGGTATTGcc > 2:310835/1‑80 (MQ=255) | CTCTACGCCCTCGATCGGCTCTTCCGCGAAGGCGGCGAAGATACCCGCGAGGCGCATAAGCGTAAAACCTCACGCATCCTCTATATTTCACCGATAAAAGCCCTGGGCACCGACGTTCAGCGCAACTTGCAGATCCCGTTGAAGGGTATTGCC > NC_000913/1729273‑1729425 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |