| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,020,705 | G→A | E207K (GAG→AAG) | fliM → | flagellar motor switch protein FliM |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,020,705 | 0 | G | A | 100.0% | 53.9 / NA | 16 | E207K (GAG→AAG) | fliM | flagellar motor switch protein FliM |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (9/7); total (9/7) | |||||||||||
CGGAAATGCAGGTGAAATTTACCAATATCACCACCTCGCCGAACGACATTGTGGTTAACACGCCGTTCCATGTGGAGATTGGCAACCTGACCGGCGAATTTAATATCTGCCTGCCATTCAGCATGATCGAGCCGCTACGGGAATTGTTGGT > NC_000913/2020631‑2020781 | cGGAAATGCAGGTGAAATTTACCAATATCACCACCTCGCCGAACGACATTGTGGTTAACACGCCGTTCCATGTGAAGATTg > 1:354485/1‑81 (MQ=255) tGCAGGTGAAATTTACCAATATCACCACCTCGCCGAACGACATTGTGGTTAACACGCCGTTCCATGTGAAGATTGGCAAcc < 1:354439/81‑1 (MQ=255) aGGTGAAATTTACCAATATCACCACCTCGCCGAACGACATTGTGGTTAACACGCCGTTCCATGTGAAGATTGGCAACCTGa > 1:354464/1‑81 (MQ=255) aCCAATATCACCACCTCGCCGAACGACATTGTGGTTAACACGCCGTTCCATGTGAAGATTGGCAACCTGACCGGCGAAtt > 2:354465/1‑80 (MQ=255) aaTATCACCACCTCGCCGAACGACATTGTGGTTAACACGCCGTTCCATGTGAAGATTGGCAACCTGACCGGCGAATTTaa > 1:354467/1‑80 (MQ=255) atatCACCACCTCGCCGAACGACATTGTGGTTAACACGCCGTTCCATGTGAAGATTGGCAACCTGACCGGCGAATTTAata > 2:354468/1‑81 (MQ=255) tCACCACCTCGCCGAACGACATTGTGGTTAACACGCCGTTCCATGTGAAGATTGGCAACCTGACCGGCGAATTTAATATct < 2:354440/81‑1 (MQ=255) accaccTCGCCGAACGACATTGTGGTTAACACGCCGTTCCATGTGAAGATTGGCAACCTGACCGGCGAATTTAATATctgc > 1:354466/1‑81 (MQ=255) gCCGAACGACATTGTGGTTAACACGCCGTTCCATGTGAAGATTGGCAACCTGACCGGCGAATTTAATATCTGCCTGCCAt < 2:354441/80‑1 (MQ=255) ccGAACGACATTGTGGTTAACACGCCGTTCCATGTGAAGATTGGCAACCTGACCGGCGAATTTAATATCTGCCTGCCATTc < 1:354442/81‑1 (MQ=255) gAACGACATTGTGGTTAACACGCCGTTCCATGTGAAGATTGGCAACCTGACCGGCGAATTTAATATCTGCCTGCCATTCAg > 1:354462/1‑81 (MQ=255) gAACGACATTGTGGTTAACACGCCGTTCCATGTGAAGATTGGCAACCTGACCGGCGAATTTAATATCTGCCTGCCATTCAg > 1:354510/1‑81 (MQ=255) tgGTTAACACGCCGTTCCATGTGAAGATTGGCAACCTGACCGGCGAATTTAATATCTGCCTGCCATTCAGCATGATCGAg < 1:354443/80‑1 (MQ=255) cATGTGAAGATTGGCAACCTGACCGGCGAATTTAATATCTGCCTGCCATTCAGCATGATCGAGCCGCTACGGGAAttgtt < 1:354444/80‑1 (MQ=255) cATGTGAAGATTGGCAACCTGACCGGCGAATTTAATATCTGCCTGCCATTCAGCATGATCGAGCCGCTACGGGAAttgtt < 1:354445/80‑1 (MQ=255) tgtgAAGATTGGCAACCTGACCGGCGAATTTAATATCTGCCTGCCATTCAGCATGATCGAGCCGCTACGGGAATTGTTGGt > 2:354479/1‑81 (MQ=255) | CGGAAATGCAGGTGAAATTTACCAATATCACCACCTCGCCGAACGACATTGTGGTTAACACGCCGTTCCATGTGGAGATTGGCAACCTGACCGGCGAATTTAATATCTGCCTGCCATTCAGCATGATCGAGCCGCTACGGGAATTGTTGGT > NC_000913/2020631‑2020781 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |