| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,108,927 | C→T | V220I (GTT→ATT) | rfbX ← | polyisoprenol‑linked O‑antigen repeat unit flippase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,108,927 | 0 | C | T | 100.0% | 53.1 / NA | 16 | V220I (GTT→ATT) | rfbX | polyisoprenol‑linked O‑antigen repeat unit flippase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (11/5); total (11/5) | |||||||||||
CCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAA > NC_000913/2108857‑2109004 | ccAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAATATGAAAACCg > 2:367956/1‑81 (MQ=255) gATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAATATGAAAACCGTCt > 2:367947/1‑81 (MQ=255) taAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAATATGAAAACCGTCTGCt > 1:367945/1‑80 (MQ=255) aTTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAATATGAAAACCGTCTGCTAAAGATCGACGCACATTATg > 2:367955/1‑80 (MQ=255) tCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAATATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTaa > 1:367958/1‑81 (MQ=255) cccGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAATATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAAt > 2:367951/1‑81 (MQ=255) ccGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAATATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAAt > 2:367950/1‑80 (MQ=255) tAGAATATAAACTAATAGCAGATGTGGAAATAAAAATATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATa < 2:367939/81‑1 (MQ=255) tataAACTAATAGCAGATGTGGAAATAAAAATATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTa < 1:367940/81‑1 (MQ=255) taAACTAATAGCAGATGTGGAAATAAAAATATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAAc > 1:367952/1‑81 (MQ=255) aGATGTGGAAATAAAAATATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATcc > 2:367953/1‑80 (MQ=255) tgGAAATAAAAATATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCtt < 2:367941/81‑1 (MQ=255) ggAAATAAAAATATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCtt > 2:367957/1‑80 (MQ=255) aaTAAAAATATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATg < 1:367942/81‑1 (MQ=255) aaaaTATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaac < 2:367943/80‑1 (MQ=255) aaaTATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaacaa > 2:367963/1‑81 (MQ=255) | CCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAA > NC_000913/2108857‑2109004 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |