Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	294,812	C→T	intergenic (‑13/+106)	yagM ← / ← ykgV	CP4‑6 prophage; protein YagM/protein YkgV

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	294,812	0	C	T	100.0%	23.9 / NA	8	intergenic (‑13/+106)	yagM/ykgV	CP4‑6 prophage; protein YagM/protein YkgV
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (1/7);  total (1/7)

CCTGGTAGAACGCTGCTCATCTCAAAATTAGTAACACTATTAGACATTTTTAAGGAAACCTCTTTGTTATCTCAATATAAAACTACTATCTGAAATTTCTCAGTGTTGCCCCATTTTTCTCGGGGCAACATCGCTAT  >  NC_000913/294753‑294889                                                            |                                                                              ccTGGTAGAACGCTGCTCATCTCAAAATTAGTAACACTATTAGACATTTTTAAGGAAACTTCTTTGTTATCTCAATATaa                                                           <  2:66813/80‑1 (MQ=255)             ctgctCATCTCAAAATTAGTAACACTATTAGACATTTTTAAGGAAACTTCTTTGTTATCTCAATATAAAACTACTATCTGa                                              <  2:66814/81‑1 (MQ=255)                   aTCTCAAAATTAGTAACACTATTAGACATTTTTAAGGAAACTTCTTTGTTATCTCAATATAAAACTACTATCTGAAAttt                                         <  1:66815/80‑1 (MQ=255)                   aTCTCAAAATTAGTAACACTATTAGACATTTTTAAGGAAACTTCTTTGTTATCTCAATATAAAACTACTATCTGAAATTtc                                        <  1:66816/81‑1 (MQ=255)                    tctcAAAATTAGTAACACTATTAGACATTTTTAAGGAAACTTCTTTGTTATCTCAATATAAAACTACTATCTGAAATTtct                                       >  2:66837/1‑81 (MQ=255)                                        ttAGACATTTTTAAGGAAACTTCTTTGTTATCTCAATATAAAACTACTATCTGAAATTTCTCAGTGTTGCCCCATTTTtct                   <  2:66817/81‑1 (MQ=255)                                                        aaaCTTCTTTGTTATCTCAATATAAAACTACTATCTGAAATTTCTCAGTGTTGCCCCATTTTTCTCGGGGCAACATCGCta   <  2:66818/81‑1 (MQ=255)                                                         aaCTTCTTTGTTATCTCAATATAAAACTACTATCTGAAATTTCTCAGTGTTGCCCCATTTTTCTCGGGGCAACATCGCtat  <  1:66819/81‑1 (MQ=255)                                                            |                                                                              CCTGGTAGAACGCTGCTCATCTCAAAATTAGTAACACTATTAGACATTTTTAAGGAAACCTCTTTGTTATCTCAATATAAAACTACTATCTGAAATTTCTCAGTGTTGCCCCATTTTTCTCGGGGCAACATCGCTAT  >  NC_000913/294753‑294889

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑