| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,560,201 | T→C | intergenic (+135/‑56) | intZ → / → yffL | CPZ‑55 prophage; putative phage integrase IntZ/CPZ‑55 prophage; uncharacterized protein YffL |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,560,201 | 0 | T | C | 100.0% | 50.4 / NA | 15 | intergenic (+135/‑56) | intZ/yffL | CPZ‑55 prophage; putative phage integrase IntZ/CPZ‑55 prophage; uncharacterized protein YffL |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (7/8); total (7/8) | |||||||||||
TGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGA > NC_000913/2560128‑2560269 | tgGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAatcattcca < 1:451712/80‑1 (MQ=255) aTAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATCATTCCATTATTCCAATTAAGTgg < 2:451713/79‑1 (MQ=255) tAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATCATTCCATTATTCCAATTAAGTGGAAt < 1:451714/81‑1 (MQ=255) aGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATCATTCCATTATTCCAATTAAGTGGAATa > 1:451733/1‑80 (MQ=255) tATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATCATTCCATTATTCCAATTAAGTGGAATAAATTATTc < 2:451715/79‑1 (MQ=255) ttCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATCATTCCATTATTCCAATTAAGTGGAATAAATTATTCAata < 1:451716/81‑1 (MQ=255) ttCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATCATTCCATTATTCCAATTAAGTGGAATAAATTATTCAat < 2:451717/80‑1 (MQ=255) ttGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATCATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAg > 2:451734/1‑80 (MQ=255) tGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATCATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGaa > 1:451742/1‑81 (MQ=255) ggATTCGTCCGGCTTTTCTTTTTCGCTAATCATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACtt > 2:451730/1‑80 (MQ=255) cGGCTTTTCTTTTTCGCTAATCATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGt > 2:451732/1‑81 (MQ=255) gCTTTTCTTTTTCGCTAATCATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGttt > 1:451740/1‑81 (MQ=255) gCTTTTCTTTTTCGCTAATCATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGttt < 2:451718/81‑1 (MQ=255) cttttTCGCTAATCATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAAc < 2:451719/80‑1 (MQ=255) tttCGCTAATCATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGa > 1:451731/1‑79 (MQ=255) tttCGCTAATCATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGa < 2:458867/79‑1 (MQ=255) | TGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGA > NC_000913/2560128‑2560269 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |