| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,766,597 | A→G | E227G (GAA→GGA) | rnlA → | CP4‑57 prophage; RNase LS, toxin of the RnlAB toxin‑antitoxin system |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,766,597 | 0 | A | G | 100.0% | 66.5 / NA | 20 | E227G (GAA→GGA) | rnlA | CP4‑57 prophage; RNase LS, toxin of the RnlAB toxin‑antitoxin system |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (12/8); total (12/8) | |||||||||||
GTTCAACAGGAGGTTGCCCGCACTTACTTGCAGACTGTAATGGCCGATGCTTACCCGCATCTCCACGTGACTGCCGAAAAATTGCTCGTTTCAGGGCTATGTGTTAAACTCGCCGCCCCTGATTTGCCTGACTACTGTATGTTACTTTATCCT > NC_000913/2766521‑2766673 | gTTCAACAGGAGGTTGCCCGCACTTACTTGCAGACTGTAATGGCCGATGCTTACCCGCATCTCCACGTGACTGCCGgaaaa > 1:495488/1‑81 (MQ=255) aaCAGGAGGTTGCCCGCACTTACTTGCAGACTGTAATGGCCGATGCTTACCCGCATCTCCACGTGACTGCCGGAAAATTGc > 2:495498/1‑81 (MQ=255) ggTTGCCCGCACTTACTTGCAGACTGTAATGGCCGATGCTTACCCGCATCTCCACGTGACTGCCGGAAAATTGCTCGttt > 2:495492/1‑80 (MQ=255) cccGCACTTACTTGCAGACTGTAATGGCCGATGCTTACCCGCATCTCCACGTGACTGCCGGAAAATTGCTCGTTTCAGGGc < 2:495469/81‑1 (MQ=255) gCACTTACTTGCAGACTGTAATGGCCGATGCTTACCCGCATCTCCACGTGACTGCCGGAAAATTGCTCGTTTCAGGGCTAt > 2:495499/1‑81 (MQ=255) gCAGACTGTAATGGCCGATGCTTACCCGCATCTCCACGTGACTGCCGGAAAATTGCTCGTTTCAGGGCTATGTGTTAAAc < 1:495470/80‑1 (MQ=255) gCAGACTGTAATGGCCGATGCTTACCCGCATCTCCACGTGACTGCCGGAAAATTGCTCGTTTCAGGGCTATGTGTTAAACt > 1:495506/1‑81 (MQ=255) aCTGTAATGGCCGATGCTTACCCGCATCTCCACGTGACTGCCGGAAAATTGCTCGTTTCAGGGCTATGTGTTAAACTcgcc < 1:495471/81‑1 (MQ=255) cGATGCTTACCCGCATCTCCACGTGACTGCCGGAAAATTGCTCGTTTCAGGGCTATGTGTTAAACTCGCCGCCCCTGAttt < 1:495472/81‑1 (MQ=255) aTGCTTACCCGCATCTCCACGTGACTGCCGGAAAATTGCTCGTTTCAGGGCTATGTGTTAAACTCGCCGCCCCTGATTTGc > 2:495503/1‑81 (MQ=255) aCCCGCATCTCCACGTGACTGCCGGAAAATTGCTCGTTTCAGGGCTATGTGTTAAACTCGCCGCCCCTGATTTGCCTGac > 2:495504/1‑80 (MQ=255) cccGCATCTCCACGTGACTGCCGGAAAATTGCTCGTTTCAGGGCTATGTGTTAAACTCGCCGCCCCTGATTTGCCTGacta > 1:495502/1‑81 (MQ=255) cccGCATCTCCACGTGACTGCCGGAAAATTGCTCGTTTCACGGCTATGTGTTAAACTCGCCGCCCCTGATTTGCCTGacta < 2:495473/81‑1 (MQ=255) ccGCATCTCCACGTGACTGCCGGAAAATTGCTCGTTTCAGGGCTATGTGTTAAACTCGCCGCCCCTGATTTGCCTGactac < 2:495474/81‑1 (MQ=255) gCATCTCCACGTGACTGCCGGAAAATTGCTCGTTTCAGGGCTATGTGTTAAACTCGCCGCCCCTGATTTGCCTGACTACTg > 1:495519/1‑81 (MQ=255) aTCTCCACGTGACTGCCGGAAAATTGCTCGTTTCAGGGCTATGTGTTAAACTCGCCGCCCCTGATTTGCCTGACTACTGTa > 1:495508/1‑81 (MQ=255) aCGTGACTGCCGGAAAATTGCTCGTTTCAGGGCTATGTGTTAAACTCGCCGCCCCTGATTTGCCTGACTACTGTATGTTAc < 2:495475/81‑1 (MQ=255) aCGTGACTGCCGGAAAATTGCTCGTTTCAGGGCTATGTGTTAAACTCGCCGCCCCTGATTTGCCTGACTACTGTATGTTAc < 2:495476/81‑1 (MQ=255) gACTGCCGGAAAATTGCTCGTTTCAGGGCTATGTGTTAAACTCGCCGCCCCTGATTTGCCTGACTACTGTATGTTACTTTa > 1:495515/1‑81 (MQ=255) gACTGCCGGAAAATTGCTCGTTTCAGGGCTATGTGTTAAACTCGCCGCCCCTGATTTGCCTGACTACTGTATGTTACTTTa > 1:495507/1‑81 (MQ=255) gCCGGAAAATTGCTCGTTTCAGGGCTATGTGTTAAACTCGCCGCCCCTGATTTGCCTGACTACTGTATGTTACTTTATCCt > 2:495510/1‑81 (MQ=255) | GTTCAACAGGAGGTTGCCCGCACTTACTTGCAGACTGTAATGGCCGATGCTTACCCGCATCTCCACGTGACTGCCGAAAAATTGCTCGTTTCAGGGCTATGTGTTAAACTCGCCGCCCCTGATTTGCCTGACTACTGTATGTTACTTTATCCT > NC_000913/2766521‑2766673 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |