Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	356,197	T→C	I9I (ATT→ATC)	codA →	cytosine/isoguanine deaminase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	356,197	0	T	C	100.0%	87.9 / NA	25	I9I (ATT→ATC)	codA	cytosine/isoguanine deaminase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (12/13);  total (12/13)

CCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATTATTAACGCCCGGTTACCAGGCGAAGAGGGGCTGTGGCAGATTCATCTGCAGGACGGAAAAATCAGCGCCATTGATGC  >  NC_000913/356119‑356274                                                                               |                                                                              ccGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAatcat                                                                             <  1:78927/81‑1 (MQ=255)  cGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAatcatt                                                                            <  2:78928/81‑1 (MQ=255)     ttttGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGTTAACAGTGTCGAATAACGCTTTACAAACAATCATTAAc                                                                         <  2:78929/81‑1 (MQ=255)        tGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATCATTAACGcc                                                                      >  2:78962/1‑81 (MQ=255)          aaTCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATCATTAACGCCCg                                                                    >  2:78973/1‑81 (MQ=255)                       cagcagCAATGACGCATGTGGAGGCTAACAGAGTCGAATAACGCTTTACAAACAATCATTAACGCCCGGTTACCAGGCGaa                                                       <  2:78930/81‑1 (MQ=255)                        agcagcAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATCATTAACGCCCGGTTACCAGGCGAag                                                      <  2:78931/81‑1 (MQ=255)                         gcagcaATGACGAATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATCATTAACGCCCGGTTACCAGGCGAaga                                                     <  2:78932/81‑1 (MQ=255)                          cagcaATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATCATTAACGCCCGGTTACCAGGCGAagag                                                    >  2:78965/1‑81 (MQ=255)                           agcaATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATCATTAACGCCCGGTTACCAGGCGAAGAgg                                                   >  1:78963/1‑81 (MQ=255)                              aaTGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATCATTAACGCCCGGTTACCAGGCGAAGAGGGGc                                                >  1:78959/1‑81 (MQ=255)                              aaTGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATCATTAACGCCCGGTTACCAGGCGAAGAGGGGc                                                <  2:78933/81‑1 (MQ=255)                                    gCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATCATTAACGCCCGGTTACCAGGCGAAGAGGGGCTGTGGc                                          <  2:78934/81‑1 (MQ=255)                                      aTGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATCATTAACGCCCGGTTACCAGGCGAAGAGGGGCTGTgg                                           >  2:795662/1‑78 (MQ=255)                                            aGGCTAACAGTGTCGAATAACGCTTTACAAACAATCATTAACGCCCGGTTACCAGGCGAAGAGGGGCTGTGGCAGATTCAt                                  <  1:78936/81‑1 (MQ=255)                                            aGGCTAACAGTGTCGAATAACGCTTTACAAACAATCATTAACGCCCGGTTACCAGGCGAAGAGGGGCTGTGGCAGATTCAt                                  <  1:78935/81‑1 (MQ=255)                                              gCTAACAGTGTCGAATAACGCTTTACAAACAATCATTAACGCCCGGTTACCAGGCGAAGAGGGGCTGTGGCAGATTCATCt                                <  2:78938/81‑1 (MQ=255)                                              gCTAACAGTGTCGAATAACGCTTTACAAACAATCATTAACGCCCGGTTACCAGGCGAAGAGGGGCTGTGGCAGATTCATCt                                <  1:78937/81‑1 (MQ=255)                                                          gAATAACGCTTTACAAACAATCATTAACGCCCGGTTACCAGGCGAAGAGGGGCTGTGGCAGATTCATCTGCAGGACGGaa                     >  1:78969/1‑80 (MQ=255)                                                           aaTAACGCTTTACAAACAATCATTAACGCCCGGTTACCAGGCGAAGAGGGGCTGTGGCAGATTCATCTGCAGGACGGaaa                    >  2:78970/1‑80 (MQ=255)                                                            aTAACGCTTTACAAACAATCATTAACGCCCGGTTACCAGGCGAAGAGGGGCTGTGGCAGATTCATCTGCAGGACGGaaaaa                  <  2:78939/81‑1 (MQ=255)                                                                 gCTTTACAAACAATCATTAACGCCCGGTTACCAGGCGAAGAGGGGCTGTGGCAGATTCATCTGCAGGACGGAAAAATCAgc             >  1:78968/1‑81 (MQ=255)                                                                   tttACAAACAATCATTAACGCCCGGTTACCAGGCGAAGAGGGGCTGTGGCAGATTCATCTGCAGGACGGAAAAATCAgcgc           >  2:78971/1‑81 (MQ=255)                                                                      acaaacaaTCATTAACGCCCGGTTACCAGGCGAAGAGGGGCTGTGGCAGATTCATCTGCAGGACGGAAAAATCAGCGCCAt        >  2:78974/1‑81 (MQ=255)                                                                        aaacaaTCATTAACGCCCGGTTACCAGGCGAAGAGGGGCTGTGGCAGATTCATCTGCAGGACGGAAAAATCAGCGCCATTg      <  2:78940/81‑1 (MQ=255)                                                                          acaaTCATTAACGCCCGGTTACCAGGCGAAGAGGGGCTGTGGCAGATTCATCTGCAGGACGGAAAAATCAGCGCCATTGAt    <  2:78941/81‑1 (MQ=255)                                                                            aaTCATTAACGCCCGGTTACCAGGCGAAGAGGGGCTGTGGCAGATTCATCTGCGGGACGGAAAAATCAGCGCCATTGATgc  >  1:78966/1‑81 (MQ=255)                                                                               |                                                                              CCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATTATTAACGCCCGGTTACCAGGCGAAGAGGGGCTGTGGCAGATTCATCTGCAGGACGGAAAAATCAGCGCCATTGATGC  >  NC_000913/356119‑356274

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑