| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,653,763 | A→G | intergenic (+50/‑198) | yhiS → / → slp | putative uncharacterized protein YhiS/starvation lipoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,653,763 | 0 | A | G | 91.7% | 31.8 / ‑3.5 | 12 | intergenic (+50/‑198) | yhiS/slp | putative uncharacterized protein YhiS/starvation lipoprotein |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (7/4); total (7/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.17e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.85e-01 | |||||||||||
TCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATGTACTTTTAAAACAATGCACTATATTATGGGGTGATGGATATTCATGTCACGCCCCAAAATTAACTGAGTTCA > NC_000913/3653689‑3653833 | tCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATGTGCtttt > 1:699771/1‑80 (MQ=255) ataataCCATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATGTGCTTTTAAAACAATGCACta > 1:699751/1‑81 (MQ=255) ccATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATGTGCTTTTAAAACAATGCACTAtattat < 1:699729/81‑1 (MQ=255) cATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATGTGCTTTTAAAACAATGCACTATATTATg > 1:699748/1‑81 (MQ=255) atatTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATGTGCTTTTAAAACAATGCACTATATTATGGGGt < 2:699730/81‑1 (MQ=255) taGCACTTTATAATCATTGAATAAAAATAGATTTTATGTGCTTTTAAAACAATGCACTATATTATGGGGTGATGGATAtt > 1:699757/1‑80 (MQ=255) aGCACTTTATAATCATTGAATAAAAATAGATTTTATGTGCTTTTAAAACAATGCACTATATTATGGGGTGATGGATATTCa > 2:699755/1‑81 (MQ=255) cTTTATAATCATTGAATAAAAATAGATTTTATGTACTTTTAAAACAATGCACTATATTATGGGGTGATGGATATTCATGTc < 2:699731/81‑1 (MQ=255) cATTGAATAAAAATAGATTTTATGTGCTTTTAAAACAATGCACTATATTATGGGGTGATGGATATTCATGTCACGCCCCa > 1:699746/1‑80 (MQ=255) aTTGAATAAAAATAGATTTTATGTGCTTTTAAAACAATGCACTATATTATGGGGTGATGGATATTCATGTCACGCCCCaaa < 2:699732/81‑1 (MQ=255) aaTAAAAATAGATTTTATGTGCTTTTAAAACAATGCACTATATTATGGGGTGATGGATATTCATGTCACGCCCCAAAATTa < 1:699733/81‑1 (MQ=255) gATTTTATGTGCTTTTAAAACAATGCACTATATTATGGGGTGATGGATATTCATGTCACGCCCCAAAATTAACTGAGTTCa > 1:699758/1‑81 (MQ=255) | TCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATGTACTTTTAAAACAATGCACTATATTATGGGGTGATGGATATTCATGTCACGCCCCAAAATTAACTGAGTTCA > NC_000913/3653689‑3653833 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |