Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,428,535	Δ1 bp	coding (92/570 nt)	ubiX ←	flavin prenyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,428,533	0	T	.	100.0%	142.2 / NA	31	coding (94/570 nt)	ubiX	flavin prenyltransferase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base . (18/13);  total (18/13)

ATGCCTGCACTTCGCGCAGAGAAAAATCCGTTTCGAGGGATAAGGTCTGGCGCGCTGCCTGGCTCATCACCAGATGCGTTTCGATATCTGTGACATCGCGCAGAACCTGTAATAAGCGCACGCCATAAATCGCGCCGCTGGCACCGCTG  >  NC_000913/2428455‑2428603                                                                               |                                                                       aTGCCTGCACTTCGCGCAGAGAAAAATCCGTTTCGAGGGATAAGGTCTGGCGCGCTGCCTGGCTCATCACCAGATGCGttc                                                                      <  1:442738/81‑2 (MQ=255)  tGCCTGCACTTCGCGCAGAGAAAAATCCGTTTCGAGGGATAAGGTCTGGCGCGCTGCCTGGCTCATCACCAGATGCGttcg                                                                     <  2:442739/81‑3 (MQ=255)    ccTGCACTTCGCGCAGAGAAAAATCCGTTTCGAGGGATAAGGTCTGGCGCGCTGCCTGGCTCATCACCAGATGCGttcgat                                                                   <  1:442740/81‑5 (MQ=255)        cACTTCGCGCAGAGAAAAATCCGTTTCGAGGGATAAGGTCTGGCGCGCTGCCTGGCTCATCACCAGATGCG‑TTCGATATCt                                                              <  2:442741/81‑1 (MQ=255)         aCTTCGCGCAGAGAAAAATCCGTTTCGAGGGATAAGGTCTGGCGCGCTGCCTGGCTCATCACCAGATGCG‑TTCGATATCtg                                                             >  1:442775/1‑81 (MQ=255)          cTTCGCGCAGAGAAAAATCCGTTTCGAGGGATAAGGTCTGGCGCGCTGCCTGGCTCATCACCAGATGCG‑TTCGATATCtgt                                                            <  1:442742/81‑1 (MQ=255)            tCGCGCAGAGAAAAATCCGTTTCGAGGGATAAGGTCTGGCGCGCTGCCTGGCTCATCACCAGATGCG‑TTCGATATCTGTGa                                                          >  1:442790/1‑81 (MQ=255)              gcgcAGAGAAAAATCCGTTTCGAGGGATAAGGTCTGGCGCGCTGCCTGGCTCATCACCAGATGCG‑TTCGATATCTGTGAc                                                         <  1:442743/80‑1 (MQ=255)               cgcAGAGAAAAATCCGTTTCGAGGGATAAGGTCTGGCGCGCTGCCTGGCTCATCACCAGATGCG‑TTCGATATCTGTGACAt                                                       <  1:442744/81‑1 (MQ=255)                 cAGAGAAAAATCCGTTTCGAGGGATAAGGTCTGGCGCGCTGCCTGGCTCATCACCAGATGCG‑TTCGATATCTGTGACATcg                                                     >  2:442772/1‑81 (MQ=255)                   gagaAAAATCCGTTTCGAGGGATAAGGTCTGGCGCGCTGCCTGGCTCATCACCAGATGCG‑TTCGATATCTGTGACATcgcg                                                   >  1:442774/1‑81 (MQ=255)                         aaTCCGTTTCGAGGGATAAGGTCTGGCGCGCTGCCTGGCTCATCACCAGATGCG‑TTCGATATCTGTGACATCGCGCAGAAc                                             <  1:442745/81‑1 (MQ=255)                           tCCGTTTCGAGGGATAAGGTCTGGCGCGCTGCCTGGCTCATCACCAGATGCG‑TTCGATATCTGTGACATCGCGCAGAACCt                                           >  2:442785/1‑81 (MQ=255)                           tCCGTTTCGAGGGATAAGGTCTGGCGCGCTGCCTGGCTCATCACCAGATGCG‑TTCGATATCTGTGACATCGCGCAGAACCt                                           <  1:442746/81‑1 (MQ=255)                              gTTTCGAGGGATAAGGTCTGGCGCGCTGCCTGGCTCATCACCAGATGCG‑TTCGATATCTGTGACATCGCGCAGAACCTGt                                         >  1:442776/1‑80 (MQ=255)                              gTTTCGAGGGATAAGGTCTGGCGCGCTGCCTGGCTCATCACCAGATGCG‑TTCGATATCTGTGACATCGCGCAGAACCTGt                                         >  1:442783/1‑80 (MQ=255)                                   gAGGGATAAGGTCTGGCGCGCTGCCTGGCTCATCACCAGATGCG‑TTCGATATCTGTGACATCGCGCAGAACCTGTAATAAg                                   >  1:442778/1‑81 (MQ=255)                                         tAAGGTCTGGCGCGCTGCCTGGCTCATCACCAGATGCG‑TTCGATATCTGTGACATCGCGCAGAACCTGTAATAAGCGCACg                             <  1:442748/81‑1 (MQ=255)                                         tAAGGTCTGGCGCGCTGCCTGGCTCATCACCAGATGCG‑TTCGATATCTGTGACATCGCGCAGAACCTGTAATAAGCGCACg                             <  2:442747/81‑1 (MQ=255)                                          aaGGTCTGGCGCGCTGCCTGGCTCATCACCAGATGCG‑TTCGATATCTGTGACATCGCGCAGAACCTGTAATAAGCGCACGc                            >  1:442789/1‑81 (MQ=255)                                             gTCTGGCGCGCTGCCTGGCTCATCACCAGATGCG‑TTCGATATCTGTGACATCGCGCAGAACCTGTAATAAGCGCACGCCa                          >  2:442788/1‑80 (MQ=255)                                                 ggCGCGCTGCCTGGCTCATCACCAGATGCG‑TTCGATATCTGTGACATCGCGCAGAACCTGTAATAAGCGCACGCCATAAAt                     >  2:442795/1‑81 (MQ=255)                                                  gcgcgcTGCCTGGCTCATCACCAGATGCG‑TTCGATATCTGTGACATCGCGCAGAACCTGTAATAAGCGCACGCCATAAAt                     <  2:442749/80‑1 (MQ=255)                                                   cgcgcTGCCTGGCTCATCACCAGATGCG‑TTCGATATCTGTGACATCGCGCAGAACCTGTAATAAGCGCACGCCATAAATcg                   >  1:442787/1‑81 (MQ=255)                                                   cgcgcTGCCTGGCTCATCACCAGATGCG‑TTCGATATCTGTGACATCGCGCAGAACCTGTAATAAGCGCACGCCATAAATcg                   >  2:442784/1‑81 (MQ=255)                                                    gcgcTGCCTGGCTCATCACCAGATGCG‑TTCGATATCTGTGACATCGCGCAGAACCTGTAATAAGCGCACGCCATAAATcgc                  >  1:442802/1‑81 (MQ=255)                                                    gcgcTGCCTGGCTCATCACCAGATGCG‑TTCGATATCTGTGACATCGCGCAGAACCTGTAATAAGCGCACGCCATAAATcgc                  >  1:442781/1‑81 (MQ=255)                                                    gcgcTGCCTGGCTCATCACCAGATGCG‑TTCGATATCTGTGACATCGCGCAGAACCTGTAATAAGCGCACGCCATAAATcgc                  >  2:442786/1‑81 (MQ=255)                                                    gcgcTGCCTGGCTCATCACCAGATGCG‑TTCGATATCTGTGACATCGCGCAGAACCTGTAATAAGCGCACGCCATAAATcgc                  >  1:442750/1‑81 (MQ=255)                                                          ccTGGCTCATCACCAGATGCG‑TTCGATATCTGTGACATCGCGCAGAACCTGTAATAAGCGCACGCCATAAATCGcgccgc             <  1:442751/80‑1 (MQ=255)                                                             ggCTCATCACCAGATGCG‑TTCGATATCTGTGACATCGCGCAGAACCTGTAATAAGCGCACGCCATAAATCGCGCCGCTgg          >  1:442794/1‑80 (MQ=255)                                                                   tcaCCAGATGCG‑TTCGATATCTGTGACATCGCGCAGAACCTGTAATAAGCGCACGCCATAAATCGCGCCGCTGGCACCGCt   <  1:442752/81‑1 (MQ=255)                                                                     aCCAGATGCG‑TTCGATATCTGTGACATCGCGCAGAACCTGTAATAAGCGCACGCCATAAATCGCGCCGCTGGCACCGCTg  <  2:442753/80‑1 (MQ=255)                                                                     aCCAGATGCG‑TTCGATATCTGTGACATCGCGCAGAACCTGTAATAAGCGCACGCCATAAATCGCGCCGCTGGCACCGCTg  <  2:442754/80‑1 (MQ=255)                                                                               |                                                                       ATGCCTGCACTTCGCGCAGAGAAAAATCCGTTTCGAGGGATAAGGTCTGGCGCGCTGCCTGGCTCATCACCAGATGCGTTTCGATATCTGTGACATCGCGCAGAACCTGTAATAAGCGCACGCCATAAATCGCGCCGCTGGCACCGCTG  >  NC_000913/2428455‑2428603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑