| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,672,739 | Δ1 bp | coding (326/900 nt) | yhjC → | putative DNA‑binding transcriptional regulator YhjC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,672,738 | 0 | C | . | 82.9% | 93.1 / 28.8 | 35 | coding (325/900 nt) | yhjC | putative DNA‑binding transcriptional regulator YhjC |
| Reads supporting (aligned to +/- strand): ref base C (3/3); new base . (15/14); total (18/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.28e-01 | |||||||||||
GTTTCAACAGGATGCCACCAGTATCAGCGGTAAATTACGCATCGACATCCCGCCAGGAATCGCGAAAAGCCTGTTACTGCCGCGCCTGTCGGAATTTCTCTATCTGCATCCGGGAATTGAGCTGGAACTGAGTAGCCATGACCGTCCGGTAGATATTC > NC_000913/3672659‑3672816 | gTTTCAACAGGATGCCACCAGTATCAGCGGTAAATTACGCATCGACATCCCGCCAGGAATCGCGAAAAGCCTGTTACTGcg > 1:709351/1‑80 (MQ=255) tttCAACAGGATGCCACCAGTATCAGCGGTAAATTACGCATCGACATCCCGCCAGGAATCGCGAAAAGCCTGTTACTGcgc < 1:709315/81‑3 (MQ=255) cAACAGGATGCCACCAGTATCAGCGGTAAATTACGCATCGACATCCCGCCAGGAATCGCGAAAAGCCTGTTACTG‑CGCGcc > 2:709350/1‑81 (MQ=255) aCAGGATGCCACCAGTATCAGCGGTAAATTACGCATCGACATCCCGCCAGGAATCGCGAAAAGCCTGTTACTG‑CGCGCCTg < 2:709316/81‑1 (MQ=255) cAGGATGCCACCAGTATCAGCGGTAAATTACGCATCGACATCCCGCCAGGAATCGCGAAAAGCCTGTTACTG‑CGCGCCTGt > 2:709352/1‑81 (MQ=255) aGGATGCCACCAGTATCAGCGGTAAATTACGCATCGACATCCCGCCAGGAATCGCGAAAAGCCTGTTACTGCCGCGCCTGt < 1:709317/81‑1 (MQ=255) aGGATGCCACCAGTATCAGCGGTAAATTACGCATCGACATCCCGCCAGGAATCGCGAAAAGCCTGTTACTG‑CGCGCCTGTc < 2:709318/81‑1 (MQ=255) tGCCACCAGTATCAGCGGTAAATTACGCATCGACATCCCGCCAGGAATCGCGAAAAGCCTGTTACTG‑CGCGCCTGTCGGaa < 2:709320/81‑1 (MQ=255) tGCCACCAGTATCAGCGGTAAATTACGCATCGACATCCCGCCAGGAATCGCGAAAAGCCTGTTACTG‑CGCGCCTGTCGGaa < 1:709319/81‑1 (MQ=255) ccaccaGTATCAGCGGTAAATTACGCATCGACATCCCGCCAGGAATCGCGAAAAGCCTGTTACTG‑CGCGCCTGTCGGAAtt < 2:709321/81‑1 (MQ=255) ccaccaGTATCAGCGGTAAATTACGCATCGACATCCCGCCAGGAATCGCGAAAAGCCTGTTACTG‑CGCGCCTGTCGGAAtt > 2:709369/1‑81 (MQ=255) caccaGTATCAGCGGTAAATTACGCATCGACATCCCGCCAGGAATCGCGAAAAGCCTGTTACTG‑CGCGCCTGTCGGAAttt < 2:709322/81‑1 (MQ=255) gTATCAGCGGTAAATTACGCATCGACATCCCGCCAGGAATCGCGAAAAGCCTGTTACTGCCGCGCCTGTCGGAATTTctct < 1:709323/81‑1 (MQ=255) gTATCAGCGGTAAATTACGCATCGACATCCCGCCAGGAATCGCGAAAAGCCTGTTACTG‑CGCGCCTGTCGGAATTTCTCTa > 2:709364/1‑81 (MQ=255) aTCAGCGGTAAATTACGCATCGACATCCCGCCAGGAATCGCGAAAAGCCTGTTACTGCCGCGCCTGTCGGAATTTCTCTAt > 1:709354/1‑81 (MQ=255) aTCAGCGGTAAATTACGCATCGACATCCCGCCAGGAATCGCGAAAAGCCTGTTACTG‑CGCGCCTGTCGGAATTTCTCTATc > 2:709380/1‑81 (MQ=255) tCAGCGGTAAATTACGCATCGACATCCCGCCAGGAATCGCGAAAAGCCTGTTACTG‑CGCGCCTGTCGGAATTTCTCTATc < 1:709324/80‑1 (MQ=255) tCAGCGGTAAATTACGCATCGACATCCCGCCAGGAATCGCGAAAAGCCTGTTACTG‑CGCGCCTGTCGGAATTTCTCTATCt < 2:709325/81‑1 (MQ=255) gCGGTAAATTACGCATCGACATCCCGCCAGGAATCGCGAAAAGCCTGTTACTG‑CGCGCCTGTCGGAATTTCTCTATCTGCa > 1:709384/1‑81 (MQ=255) aTTACGCATCGACATCCCGCCAGGAATCGCGAAAAGCCTGTTACTG‑CGCGCCTGTCGGAATTTCTCTATCTGCATCCggg > 2:709368/1‑80 (MQ=255) aTTACGCATCGACATCCCGCCAGGAATCGCGAAAAGCCTGTTACTG‑CGCGCCTGTCGGAATTTCTCTATCTGCATCCGGGa < 2:709326/81‑1 (MQ=255) cGCATCGACATCCCGCCAGGAATCGCGAAAAGCCTGTTACTG‑CGCGCCTGTCGGAATTTCTCTATCTGCATCCGGGAAtt < 2:709327/80‑1 (MQ=255) gCATCGACATCCCGCCAGGAATCGCGAAAAGCCTGTTACTG‑CGCGCCTGTCGGAATTTCTCTATCTGCATCCGGGAAtt > 1:709375/1‑79 (MQ=255) gCATCGACATCCCGCCAGGAATCGCGAAAAGCCTGTTACTG‑CGCGCCTGTCGGAATTTCTCTATCTGCATCCGGGAAtt > 1:709370/1‑79 (MQ=255) cGACATCCCGCCAGGAATCGCGAAAAGCCTGTTACTG‑CTCGCCTGTCGGAATTTCTCTATCTGCATCCGGGAATTGAGCTg > 2:709381/1‑81 (MQ=255) cGACATCCCGCCAGGAATCGCGAAAAGCCTGTTACTG‑CGCGCCTGTCGGAATTTCTCTATCTGCATCCGGGAATTGAGCTg > 2:709373/1‑81 (MQ=255) gACATCCCGCCAGGAATCGCGAAAAGCCTGTTACTG‑CGCGCCTGTCGGAATTTCTCTATCTGCATCCGGGAATTGAGCTgg < 1:709328/81‑1 (MQ=255) cctccAGGAATCGCGAAAAGCCTGTTACTG‑CGCGCCTGTCGGAATTTCTCTATCTGCATCCGGGAATTGAGCTGTAACt > 2:709362/4‑79 (MQ=255) ggAATCGCGAAAAGCCTGTTACTG‑CGCGCCTGTCGGAATTTCTCTATCTGCATCCGGGAATTGAGCTGGAACTGAGTAGc > 1:709390/1‑80 (MQ=255) gAATCGCGAAAAGCCTGTTACTG‑CGCGCCTGTCGGAATTTCTCTATCTGCATCCGGGAATTGAGCTGGAACTGAGTAGCCa < 1:709329/81‑1 (MQ=255) aTCGCGAAAAGCCTGTTACTG‑CGCGCCTGTCGGAATTTCTCTATCTGCATCCGGGAATTGAGCTGGAACTGAGTAGCCAt > 2:709377/1‑80 (MQ=255) gAAAAGCCTGTTACTG‑CGCGCCTGTCGGAATTTCTCTATCTGCATCCGGGAATTGAGCTGGAACTGAGTAGCCATGACCGt < 1:709330/81‑1 (MQ=255) aaaGCCTGTTACTGCCGCGCCTGTCGGAATTTCTCTATCTGCATCCGGGAATTGAGCTGGAACTGAGTAGCCATGACCGTc > 1:709379/1‑81 (MQ=255) aaGCCTGTTACTGCCGCGCCTGTCGGAATTTCTCTATCTGCATCCGGGAATTGAGCTGGAACTGAGTAGCCATGACCGTcc < 2:709331/81‑1 (MQ=255) gCCTGTTACTG‑CGCGCCTGTCGGAATTTCTCTATCTGCATCCGGGAATTGAGCTGGAACTGAGTAGCCATGACCGTCCGGt < 1:709332/81‑1 (MQ=255) tGTTACTG‑CGCGCCTGTCGGAATTTCTCTATCTGCATCCGGGAATTGAGCTGGAACTGAGTAGCCATGACCGTCCgg > 2:709372/1‑77 (MQ=255) tGCCGCGCCTGTCGGAATTTCTCTATCTGCATCCGGGAATTGAGCTGGAACTGAGTAGCCATGACCGTCCGGTAGATAttc > 2:709376/1‑81 (MQ=255) | GTTTCAACAGGATGCCACCAGTATCAGCGGTAAATTACGCATCGACATCCCGCCAGGAATCGCGAAAAGCCTGTTACTGCCGCGCCTGTCGGAATTTCTCTATCTGCATCCGGGAATTGAGCTGGAACTGAGTAGCCATGACCGTCCGGTAGATATTC > NC_000913/3672659‑3672816 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |