Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,562,119	C→T	G3G (GGC→GGT)	yffO →	CPZ‑55 prophage; uncharacterized protein YffO

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,562,119	0	C	T	100.0%	79.6 / NA	23	G3G (GGC→GGT)	yffO	CPZ‑55 prophage; uncharacterized protein YffO
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (15/8);  total (15/8)

AACCTCAATTCTTGCGAAAAATGGCAAAAATAACGGTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGCGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACACCGAAAAAGCGCGGTCGGCCAGCT  >  NC_000913/2562048‑2562191                                                                        |                                                                         aaCCTCAATTCTTGCGAAAAATGGCAAAAATAACGGTATTTTTCATCATTTATTGGGGGTTTTATGTAAGGTGAACTGa                                                                   >  2:467267/1‑79 (MQ=255)       aaTTCTTGCGAAAAATGGCAAAAATAACGGTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGTGAACTGATAGaaaa                                                            >  2:467271/1‑80 (MQ=255)         ttCTTGCGAAAAATGGCAAAAATAACGGTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACaa                                                         >  2:467270/1‑81 (MQ=255)               cGAAAAATGGCAAAAATAACGGTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGt                                                    >  2:467262/1‑80 (MQ=255)                     aTGGCAAAAATAACGGTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACAt                                             <  1:467241/81‑1 (MQ=255)                      tGGCAAAAATAACGGTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACAtt                                            >  2:467261/1‑81 (MQ=255)                                 aCGGTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCa                                  <  2:467242/80‑1 (MQ=255)                                 aCGGTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCa                                  <  2:467243/80‑1 (MQ=255)                                    gTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCg                               >  1:467281/1‑80 (MQ=255)                                         tttCATCATTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAaca                          <  2:467244/80‑1 (MQ=255)                                          ttCATCATTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAacac                         <  1:467245/80‑1 (MQ=255)                                          ttCATCATTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACAcc                        >  1:467265/1‑81 (MQ=255)                                           tcatcaTTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACAcc                        >  2:467264/1‑80 (MQ=255)                                            catcatTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACACCg                       >  2:467258/1‑80 (MQ=255)                                             atcatTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACACCGa                      >  2:467266/1‑80 (MQ=255)                                               catTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACACCGaaa                    >  1:467277/1‑80 (MQ=255)                                                         gggTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACACCGAAAAAGCGCGGTCg         >  1:467279/1‑81 (MQ=255)                                                           gTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACACCGAAAAAGCGCGGTCGGc       <  2:793429/81‑1 (MQ=255)                                                           gTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACACCGAAAAAGCGCGGTCGGc       >  2:467269/1‑81 (MQ=255)                                                           gTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACACCGAAAAAGCGCGGTCGGc       <  2:467246/81‑1 (MQ=255)                                                             tttATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACACCGAAAAAGCGCGGTCGGc       >  2:467273/1‑79 (MQ=255)                                                                aTGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACACCGAAAAAGCGCGGTCGGCCAGc   >  1:467274/1‑80 (MQ=255)                                                                 tGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACACCGAAAAAGCGCGGTCGGCCAGCt  <  2:467247/80‑1 (MQ=255)                                                                        |                                                                         AACCTCAATTCTTGCGAAAAATGGCAAAAATAACGGTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGCGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACACCGAAAAAGCGCGGTCGGCCAGCT  >  NC_000913/2562048‑2562191

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑