| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,653,478 | C→A | intergenic (+139/‑377) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/small regulatory RNA RyfA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,653,478 | 0 | C | A | 100.0% | 55.6 / NA | 16 | intergenic (+139/‑377) | sseA/ryfA | 3‑mercaptopyruvate sulfurtransferase/small regulatory RNA RyfA |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (6/10); total (6/10) | |||||||||||
TCCAGCAGGTTGACTTGTGTTACATGAGCAACGCAGGTGCTTCACAGCAAAACAATACTCACCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTAATTATTGTTTATTTAGCGTATTATCGACACCGGCCCTTTCCGCCGTGTTCGG > NC_000913/2653408‑2653555 | tCCAGCAGGTTGACTTGTGTTACATGAGCAACGCAGGTGCTTCACAGCAAAACAATACTCACCAGTAACTATCTTTTTGt < 1:486209/80‑1 (MQ=255) gcagGTTGACTTGTGTTACATGAGCAACGCAGGTGCTTCACAGCAAAACAATACTCACCAGTAACTATCTTTTTGTCAAGc < 1:486210/81‑1 (MQ=255) gTTGACTTGTGTTACATGAGCAACGCAGGTGCTTCACAGCAAAACAATACTCACCAGTAACTATCTTTTTGTCAAGCaaaa < 2:486211/81‑1 (MQ=255) gACTTGTGTTACATGAGCAACGCAGGTGCTTCACAGCAAAACAATACTCACCAGTAACTATCTTTTTGTCAAGCaaaa > 1:486234/1‑78 (MQ=255) gtgtTACATGAGCAACGCAGGTGCTTCACAGCAAAACAATACTCACCAGTAACTATCTTTTTGTCAAGCAAAAGAGAGt < 2:486212/79‑1 (MQ=255) gtTACATGAGCAACGCAGGTGCTTCACAGCAAAACAATACTCACCAGTAACTATCTTTTTGTCAAGCAAAAGAGAGTAat > 1:486237/1‑80 (MQ=255) cATGAGCAACGCAGGTGCTTCACAGCAAAACAATACTCACCAGTAACTATCTTTTTGTCAAGCAAAAGAGAGTAATTATTg > 2:486238/1‑81 (MQ=255) tGAGCAACGCAGGTGCTTCACAGCAAAACAATACTCACCAGTAACTATCTTTTTGTCAAGCAAAAGAGAGTAATTATTGtt < 2:486213/81‑1 (MQ=255) tGCTTCACAGCAAAACAATACTCACCAGTAACTATCTTTTTGTCAAGCAAAAGAGAGTAATTATTGTTTATTTAGCGtatt < 1:486214/81‑1 (MQ=255) cacaGCAAAACAATACTCACCAGTAACTATCTTTTTGTCAAGCAAAAGAGAGTAATTATTGTTTATTTAGCGTATTATc < 1:486215/79‑1 (MQ=255) cacaGCAAAACAATACTCACCAGTAACTATCTTTTTGTCAAGCAAAAGAGAGTAATTATTGTTTATTTAGCGTATTATCGa > 1:486247/1‑81 (MQ=255) acaGCAAAACAATACTCACCAGTAACTATCTTTTTGTCAAGCAAAAGAGAGTAATTATTGTTTATTTAGCGTATTATCGa > 1:486245/1‑80 (MQ=255) gCAAAACAATACTCACCAGTAACTATCTTTTTGTCAAGCAAAAGAGAGTAATTATTGTTTATTTAGCGTATTATCGACAcc < 1:486216/81‑1 (MQ=255) aTACTCACCAGTAACTATCTTTTTGTCAAGCAAAAGAGAGTAATTATTGTTTATTTAGCGTATTATCGACACCGGCCCttt < 1:486217/81‑1 (MQ=255) gTAACTATCTTTTTGTCAAGCAAAAGAGAGTAATTATTGTTTATTTAGCGTATTATCGACACCGGCCCTTTCCGCCGTGtt < 1:486218/81‑1 (MQ=255) aCTATCTTTTTGTCAAGCAAAAGAGAGTAATTATTGTTTATTTAGCGTATTATCGACACCGGCCCTTTCCGCCGTGTTCgg > 2:486240/1‑81 (MQ=255) | TCCAGCAGGTTGACTTGTGTTACATGAGCAACGCAGGTGCTTCACAGCAAAACAATACTCACCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTAATTATTGTTTATTTAGCGTATTATCGACACCGGCCCTTTCCGCCGTGTTCGG > NC_000913/2653408‑2653555 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |