| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,374,775 | C→T | intergenic (‑286/‑94) | nanR ← / → dcuD | DNA‑binding transcriptional dual regulator NanR/putative transporter DcuD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,374,775 | 0 | C | T | 100.0% | 54.7 / NA | 16 | intergenic (‑286/‑94) | nanR/dcuD | DNA‑binding transcriptional dual regulator NanR/putative transporter DcuD |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (8/8); total (8/8) | |||||||||||
CTTACAAAATAATCATAAGCGCATATTTTTTAATGAAAAATCACCTCACCTACAATTAAAAACACGACATCCGCACCATAAATAGCCTTGCAAAAAATATAACATCGTTGTTTTCAATCTGCCGTTTATGGGATTGACCGTTTTC > NC_000913/3374704‑3374848 | cTTACAAAATAATCATAAGCGCATATTTTTTAATGAAAAATCACCTCACCTACAATTAAAAACACGACATCTGCACCATa < 1:640302/80‑1 (MQ=255) tACAAAATAATCATAAGCGCATATTTTTTAATGAAAAATCACCTCACCTACAATTAAAAACACGACATCTGCACCATaaa > 1:640331/1‑80 (MQ=255) aTAAGCGCATATTTTTTAATGAAAAATCACCTCACCTACAATTAAAAACACGACATCTGCACCATAAATAGCCTTGCaaaa < 1:640303/81‑1 (MQ=255) aTAAGCGCATATTTTTTAATGAAAAATCACCTCACCTACAATTAAAAACACGACATCTGCACCATAAATAGCCTTGCaaa < 2:640304/80‑1 (MQ=255) tatTTTTTAATGAAAAATCACCTCACCTACAATTAAAAACACGACATCTGCACCATAAATAGCCTTGCAAAAAATATAACa > 2:640334/1‑81 (MQ=255) tttAATGAAAAATCACCTCACCTACAATTAAAAACACGACATCTGCACCATAAATAGCCTTGCAAAAAATATAACATCgt < 1:640305/80‑1 (MQ=255) gAAAAATCACCTCACCTACAATTAAAAACACGACATCTGCACCATAAATAGCCTTGCAAAAAATATAACATCGTTGtttt > 1:640324/1‑80 (MQ=255) aaaaaTCACCTCACCTACAATTAAAAACACGACATCTGCACCATAAATAGCCTTGCAAAAAATATAACATCGTTGTTTTCa < 1:640306/81‑1 (MQ=255) aaaaTCACCTCACCTACAATTAAAAACACGACATCTGCACCATAAATAGCCTTGCAAAAAATATAACATCGTTGTTTTCaa > 1:640326/1‑81 (MQ=255) cctcacctACAATTAAAAACACGACATCTGCACCATAAATAGCCTTGCAAAAAATATAACATCGTTGTTTTCAATCTGCCg > 1:640321/1‑81 (MQ=255) ctcacctACAATTAAAAACACGACATCTGCACCATAAATAGCCTTGCAAAAAATATAACATCGTTGTTTTCAATCTGCCGt > 2:640322/1‑81 (MQ=255) acctACAATTAAAAACACGACATCTGCACCATAAATAGCCTTGCAAAAAATATAACATCGTTGTTTTCAATCTGCCGttt < 1:640307/80‑1 (MQ=255) aaTTAAAAACACGACATCTGCACCATAAATAGCCTTGCAAAAAATATAACATCGTTGTTTTCAATCTGCCGTTTATGGGAt > 1:640327/1‑81 (MQ=255) aaTTAAAAACACGACATCTGCACCATAAATAGCCTTGCAAAAAATATAACATCGTTGTTTTCAATCTGCCGTTTATGGGAt > 2:640339/1‑81 (MQ=255) aaaaCACGACATCTGCACCATAAATAGCCTTGCAAAAAATATAACATCGTTGTTTTCAATCTGCCGTTTATGGGATTGAcc < 1:640308/81‑1 (MQ=255) cGACATCTGCACCATAAATAGCCTTGCAAAAAATATAACATCGTTGTTTTCAATCTGCCGTTTATGGGATTGACCGTTTTc < 1:640309/81‑1 (MQ=255) | CTTACAAAATAATCATAAGCGCATATTTTTTAATGAAAAATCACCTCACCTACAATTAAAAACACGACATCCGCACCATAAATAGCCTTGCAAAAAATATAACATCGTTGTTTTCAATCTGCCGTTTATGGGATTGACCGTTTTC > NC_000913/3374704‑3374848 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |