| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 511,329 | G→T | C17* (TGC→TGA) C17* (TGC→TGA) |
copA ← copA ← |
Cu(+) exporting P‑type ATPase Cu(+) exporting P‑type ATPase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 511,329 | 0 | G | T | 94.4% | 121.7 / 0.4 | 36 | C17* (TGC→TGA) C17* (TGC→TGA) | copA copA | Cu(+) exporting P‑type ATPase Cu(+) exporting P‑type ATPase |
| Reads supporting (aligned to +/- strand): ref base G (1/1); new base T (15/19); total (16/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.49e-01 | |||||||||||
CGCTTCAGTGATAGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGACAGTTTTG > NC_000913/511257‑511404 | cgcTTCAGTGATAGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACTCAGTGAcc < 2:108148/81‑1 (MQ=255)cgcTTCAGTGATAGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACTCAGTGAc < 2:108149/80‑1 (MQ=255) ttCAGTGATAGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACTCAGTGACCg > 1:108179/1‑79 (MQ=255) tCAGTGATAGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACTCAGTGACCGCAg > 1:108174/1‑81 (MQ=255) aGTGATAGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACTCAGTGACCGCAGGa < 1:108150/81‑1 (MQ=255) tGATAGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACTCAGTGACCGCAGGACa < 2:108151/81‑1 (MQ=255) aTAGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAg < 1:108152/80‑1 (MQ=255) aGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACTCAGTGACCGCAGGACAGGcc > 2:108190/1‑81 (MQ=255) acaTCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACTCAGTGACCGCAGGACAGGCCGTc > 2:108186/1‑80 (MQ=255) caTCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACTCAGTGACCGCAGGACAGGCCGTc > 1:108202/1‑79 (MQ=255) aTCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACTCAGTGACCGCAGGACAGGCCGTCCAg < 1:108153/81‑1 (MQ=255) aTCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACTCAGTGACCGCAGGACAGGCCGTCCAg > 1:108185/1‑81 (MQ=255) gCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACTCAGTGACCGCAGGACAGGCCGTCCAGGGt > 2:108195/1‑80 (MQ=255) ccTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACTCAGTGACCGCAGGACAGGCCGTCCAGGGTCa < 1:108154/81‑1 (MQ=255) gCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACTCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGt > 1:108188/1‑81 (MQ=255) cTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTc > 1:108192/1‑81 (MQ=255) cAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACTCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGa > 2:108189/1‑81 (MQ=255) aCATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACTCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATa < 1:108155/81‑1 (MQ=255) cATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACTCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAg > 1:108194/1‑81 (MQ=255) ccGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACTCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGttt > 2:108197/1‑81 (MQ=255) cGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACTCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGttt < 1:108156/80‑1 (MQ=255) ggACGCTGTTCAAGACTTTCTTTCACGCGTTTAACTCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTtgt < 1:108157/81‑1 (MQ=255) ggACGCTGTTCAAGACTTTCTTTCACGCGTTTAACTCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTtgt > 1:108193/1‑81 (MQ=255) ttCAAGACTTTCTTTCACGCGTTTAACTCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATaaa < 1:108158/81‑1 (MQ=255) ttCAAGACTTTCTTTCACGCGTTTAACTCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATa < 2:108159/79‑1 (MQ=255) aGACTTTCTTTCACGCGTTTAACTCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAacac < 2:108160/81‑1 (MQ=255) tctttcACGCGTTTAACTCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCtt < 1:108161/80‑1 (MQ=255) tctttcACGCGTTTAACTCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCt < 2:108162/79‑1 (MQ=255) cACGCGTTTAACTCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGa > 2:108205/1‑80 (MQ=255) cgcgTTTAACTCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGACAg > 2:108200/1‑81 (MQ=255) gcgTTTAACTCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGACAGt < 1:108163/81‑1 (MQ=255) gcgTTTAACTCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGACAGt < 2:108164/81‑1 (MQ=255) cgTTTAACTCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGACAGtt < 1:108165/81‑1 (MQ=255) gTTTAACTCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGACAGttt < 2:108166/81‑1 (MQ=255) gTTTAACTCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGACAGttt > 2:108259/1‑81 (MQ=255) tAACTCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGACAGTTTTg < 2:108167/80‑1 (MQ=255) | CGCTTCAGTGATAGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGACAGTTTTG > NC_000913/511257‑511404 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |