Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 2,782,393 | (C)5→4 | coding (334/4581 nt) | ypjA ← | adhesin‑like autotransporter YpjA |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 2,782,389 | 0 | C | . | 100.0% | 65.0 / NA | 15 | coding (338/4581 nt) | ypjA | adhesin‑like autotransporter YpjA |
Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (6/9); total (6/9) |
GTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATACCCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGA > NC_000913/2782320‑2782460 | gTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCATCATGaa < 1:478431/81‑1 (MQ=255) ccATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCATCATGAAtt > 1:478462/1‑80 (MQ=255) ttGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCATCATGAATTGACt > 1:478458/1‑81 (MQ=255) aTACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCATCATGAATTGACTGTCTGc > 1:478457/1‑81 (MQ=255) ccccTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCATCATGAATTGACTGTCTGCCAcc < 1:478432/81‑1 (MQ=255) aaaCGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCATCATGAATTGACTGTCTGCCACCGTTAATGGt > 2:478460/1‑81 (MQ=255) cGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCATCATGAATTGACTGTCTGCCACCGTTAATGGTTGt < 1:478433/81‑1 (MQ=255) cTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCATCATGAATTGACTGTCTGCCACCGTTAATGGTTGtatta < 1:478434/81‑1 (MQ=255) aTTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCATCATGAATTGACTGTCTGCCACCGTTAATGGTTGtattat > 1:478461/1‑79 (MQ=255) gCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCATCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGc < 1:478435/80‑1 (MQ=255) gCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCATCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGc < 1:478436/80‑1 (MQ=255) gCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCATCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGc < 2:478437/80‑1 (MQ=255) aTTGTCGTACCTGTGGAAATA‑CCCCATCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACaa < 1:478438/81‑1 (MQ=255) ccTGTGGAAATA‑CCCCATCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTa < 1:478439/80‑1 (MQ=255) tgtgGAAATA‑CCCCATCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGa > 2:478464/1‑81 (MQ=255) | GTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATACCCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGA > NC_000913/2782320‑2782460 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |