| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,816,566 | 0 | T | C | 69.2% | 31.2 / 17.3 | 26 | L125L (TTA→TTG) | yqaA | DedA family protein YqaA |
| Reads supporting (aligned to +/- strand): ref base T (2/6); new base C (5/13); total (7/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.35e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGTGACCATATGTGCAGGCCTACAATTAGTGCCACCACATCATGCCCTGAACGGTCGCTGCTGCAACTGCAACATAGCGTAACGCTTTACCAAGGCACAAAAAAAAGATTACCGGTCCCCACGAGATGCGCATCCATCCCGCTAACAGACACAGTAAATC > NC_000913/2816487‑2816646 | ggTGACCATATGTGCAGGCCTACAATTAGTGCCACCACATCATGCTCTGAACGGTCGCTGCTGCAACTGCAACATAGCGt > 2:484275/1‑80 (MQ=255) tGACCATATGTGCAGGCCTACAATTAGTGCCACCACATCATGCCCTGAACGGTCGCTGCTGCAACTGCAACATAGCGCAAc < 2:484234/81‑1 (MQ=255) tGACCATATGTGCAAGGCTAAAATTAATGCCACCACAACATTGCCTGAACGGTCGCTGCTGCAACTGCAACATAGCGCAAc < 2:484235/81‑1 (MQ=255) cATATGTGCAGGCCTACAATTAGTGCCACCACATCATGCCCTGAACGGTCGCTGCTGCAACTGCAACATAGCGCAACGCtt > 1:484267/1‑81 (MQ=255) cATATGTGCAGGCCTACAATTAGTGCCACCACATCATGCCCTGAACGGTCGCTGCTGCAACTGCAACATAGCGCAACGCtt < 2:484236/81‑1 (MQ=255) tgtgCAGGCCTACAATTAGTGCCACCACATCATGCCCTGAACGGTCGCTGCTGCAACTGCAACATAGCGCAACGCTTTAc < 2:484237/80‑1 (MQ=255) ggCCTACAATTAGTGCCACCACATCATGCCCTGAACGGTCGCTGCTGCAACTGCAACATAGCGCAACGCTTTACCAAGGca > 1:484270/1‑81 (MQ=255) cAATTAGTGCCACCACATCATGCCCTGAACGGTCGCTGCTGCAACTGCAACATAGCGCAACGCTTTACCAAGGCACaaaaa < 2:484238/81‑1 (MQ=255) ccaccaCATCATGCCCTGAACGGTCGCTGCTGCAACTGCAACATAGCGTAACGCTTTACCAAGGCACAAAAAAAAGATTAc < 2:484239/81‑1 (MQ=255) ccaccaCATCATGCCCTGAACGGTCGCTGCTGCAACTGCAACATAGCGCAACGCTTTACCAAGGCACAAAAAAAAGATTAc < 2:484240/81‑1 (MQ=255) cacaTCATGCCCTGAACGGTCGCTGCTGCAACTGCAACATAGCGTAACGCTTTACCAAGGCACAAAAAAAAGATTACCGGt < 1:484241/81‑1 (MQ=255) cacaTCATGCCCTGAACGGTCGCTGCTGCAACTGCAACATAGCGCAACGCTTTACCAAGGCACAAAAAAAAGATTACCGGt > 1:484273/1‑81 (MQ=255) acaTCATGCCCTGAACGGTCGCTGCTGCAACTGCAACATAGCGTAACGCTTTACCAAGGCACAAAAAAAAGATTACCGGTc < 1:484242/81‑1 (MQ=255) acaTCATGCCCTGAACGGTCGCTGCTGCAACTGCAACATAGCGTAACGCTTTACCAAGGCACAAAAAAAAGATTACCGGTc < 2:484243/81‑1 (MQ=255) cccTGAACGGTCGCTGCTGCAACTGCAACATAGCGCAACGCTTTACCAAGGCACAAAAAAAAGATTACCGGTCCCCACgag < 2:484244/81‑1 (MQ=255) aaCGGTCGCTGCTGCAACTGCAACATAGCGTAACGCTTTACCAAGGCACAAAAAAAAGATTACCGGTCCCCACGAGATgcg > 2:484280/1‑81 (MQ=255) tgctgcAACTGCAACATAGCGCAACGCTTTACCAAGGCACAAAAAAAAGATTACCGGTCCCCACGAGATGCGCatccatcc > 1:484276/1‑81 (MQ=255) ctgcaactgcaaCATAGCGTAACGCTTTACCAAGGCACAAAAAAAAGATTACCGGTCCCCACGAGATGCGCATCCATccc < 1:484245/80‑1 (MQ=255) ctgcaactgcaaCATAGCGTAACGCTTTACCAAGGCACAAAAAAAAGATTACCGGTCCCCACGAGATGCGCATCCATCCCg > 2:484278/1‑81 (MQ=255) ctgcaactgcaaCATAGCGCAACGCTTTACCAAGGCACAAAAAAAAGATTACCGGTCCCCACGAGATGCGCATCCATccc < 1:484246/80‑1 (MQ=255) caactgcaacATAGCGCAACGCTTTACCAAGGCACAAAAAAAAGATTACCGGTCCCCACGAGATGCGCATCCATCCCGc < 1:484248/79‑1 (MQ=255) caactgcaacATAGCGCAACGCTTTACCAAGGCACAAAAAAAAGATTACCGGTCCCCACGAGATGCGCATCCATCCCGCt > 1:484277/1‑80 (MQ=255) caactgcaacATAGCGCAACGCTTTACCAAGGCACAAAAAAAAGATTACCGGTCCCCACGAGATGCGCATCCATCCCGCt < 2:484247/80‑1 (MQ=255) actgcaacATAGCGTAACGCTTTACCAAGGCACAAAAAAAAGATTACCGGTCCCCACGAGATGCGCATCCATCCCGCTAAc < 1:484249/81‑1 (MQ=255) actgcaacATAGCGCAACGCTTTACCAAGGCACAAAAAAAAGATTACCGGTCCCCACGAGATGCGCATCCATCCCGCTAAc < 2:484250/81‑1 (MQ=255) actgcaacATAGCGCAACGCTTTACAAAGGCACAAAAAAAAGATTACCGGTCCCCACGAGATGCGCATCCATCCCGCTAAc < 2:484251/81‑1 (MQ=255) aTAGCGCAACGCTTTACCAAGGCACAAAAAAAAGATTACCGGTCCCCACGAGATGCGCATCCATCCCGCTAACAGACACAg < 1:484252/81‑1 (MQ=255) tAACGCTTTACCAAGGCACAAAAAAAAGATTACCGGTCCCCACGAGATGCGCATCCATCCCGCTAACAGACACAGTAAATc < 1:484253/81‑1 (MQ=255) | GGTGACCATATGTGCAGGCCTACAATTAGTGCCACCACATCATGCCCTGAACGGTCGCTGCTGCAACTGCAACATAGCGTAACGCTTTACCAAGGCACAAAAAAAAGATTACCGGTCCCCACGAGATGCGCATCCATCCCGCTAACAGACACAGTAAATC > NC_000913/2816487‑2816646 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |