Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,061,195	C→T	P647L (CCG→CTG)	torA →	trimethylamine N‑oxide reductase 1

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,061,195	0	C	T	100.0%	78.6 / NA	24	P647L (CCG→CTG)	torA	trimethylamine N‑oxide reductase 1
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (13/11);  total (13/11)

ACCATCCGCAGATGTTTGTTCGCCACCAGGCATTCCGCGAAGATCCGGATCTCGAACCGCTGGGCACGCCGAGTGGCCTGATTGAGATCTACTCGAAAACTATCGCCGATATGAACTACGACGATTGTCAGGGGCATCCGATGT  >  NC_000913/1061126‑1061269                                                                      |                                                                           aCCATCCGCAGATGTTTGTTCGCCACCAGGCATTCCGCGAAGATCCGGATCTCGAACCGCTGGGCACGCTGAGTGGCCTg                                                                  <  2:195077/80‑1 (MQ=255)     tCCGCAGATGTTTGTTCGCCACCAGGCATTCCGCGAAGATCCGGATCTCGAACCGCTGGGCACGCTGAGTGGCCTGATTga                                                             <  1:195079/81‑1 (MQ=255)     tCCGCAGATGTTTGTTCGCCACCAGGCATTCCGCGAAGATCCGGATCTCGAACCGCTGGGCACGCTGAGTGGCCTGATTga                                                             <  1:195078/81‑1 (MQ=255)          aGATGTTTGTTCGCCACCAGGCATTCCGCGAAGATCCGGATCTCGAACCGCTGGGCACGCTGAGTGGCCTGATTGAGATCt                                                        <  1:195080/81‑1 (MQ=255)                       ccaccaGGCATTCCGCGAAGATCCGGATCTCGAACCGCTGGGCACGCTGAGTGGCCTGATTGAGATCTACTCGAAAACTAt                                           >  2:195117/1‑81 (MQ=255)                          ccaGGCATTCCGCGAAGATCCGGATCTCGAACCGCTGGGCACGCTGAGTGGCCTGATTGAGATCTACTCGAAAACTATCGc                                        <  1:195081/81‑1 (MQ=255)                            aGGCATTCCGCGAAGATCCGGATCTCGAACCGCTGGGCACGCTGAGTGGCCTGATTGAGATCTACTCGAAAACTATCGcc                                       >  1:195105/1‑80 (MQ=255)                            aGGCATTCCGCGAAGATCCGGATCTCGAACCGCTGGGCACGCTGAGTGGCCTGATTGAGATCTACTCGAAAACTATCGcc                                       >  2:195109/1‑80 (MQ=255)                               cATTCCGCGAAGATCCGGATCTCGAACCGCTGGGCACGCTGAGTGGCCTGATTGAGATCTACTCGAAAACTATCGCCGata                                   >  2:195118/1‑81 (MQ=255)                                aTTCCGCGAAGATCCGGATCTCGAACCGCTGGGCACGCTGAGTGGCTTGATTGAGATCTACTCGAAAACTATCGCCGaaat                                  >  2:195122/1‑81 (MQ=255)                                aTTCCGCGAAGATCCGGATCTCGAACCGCTGGGCACGCTGAGTGGCCTGATTGAGATCTACTCGAAAACTATCGCCGatat                                  <  1:195082/81‑1 (MQ=255)                                  tCCGCGAAGATCCGGATCTCGAACCGCTGGGCACGCTGAGTGGCCTGATTGAGATCTACTCGAAAACTATCGCCGATATg                                 >  1:195115/1‑80 (MQ=255)                                      cgAAGATCCGGATCTCGAACCGCTGGGCACGCTGAGTGGCCTGATTGAGATCTACTCGAAAACTATCGCCGATATGAACTa                            >  2:195110/1‑81 (MQ=255)                                        aaGATCCGGATCTCGAACCGCTGGGCACGCTGAGTGGCCTGATTGAGATCTACTCGAAAACTATCGCCGATATGAACTacg                          <  1:195083/81‑1 (MQ=255)                                              cGGATCTCGAACCGCTGGGCACGCTGAGTGGCCTGATTGAGATCTACTCGAAAACTATCGCCGATATGAACTACGACGAtt                    >  2:195119/1‑81 (MQ=255)                                              cGGATCTCGAACCGCTGGGCACGCTGAGTGGCCTGATTGAGATCTACTCGAAAACTATCGCCGATATGAACTACGACGAt                     <  2:195084/80‑1 (MQ=255)                                               ggATCTCGAACCGCTGGGCACGCTGAGTGGCCTGATTGAGATCTACTCGAAAACTATCGCCGATATGAACTACGACGATTg                   <  1:195085/81‑1 (MQ=255)                                                   ctcGAACCGCTGGGCACGCTGAGTGGCCTGATTGAGATCTACTCGAAAACTATCGCCGATATGAACTACGACGATTGTCAg               >  2:195123/1‑81 (MQ=255)                                                     cGAACCGCTGGGCACGCTGAGTGGCCTGATTGAGATCTACTCGAAAACTATCGCCGATATGAACTACGACGATTGTCAggg             >  2:195133/1‑81 (MQ=255)                                                        aCCGCTGGGCACGCTGAGTGGCCTGATTGAGATCTACTCGAAAACTATCGCCGATATGAACTACGACGATTGTCAGGGGCa          >  2:195108/1‑81 (MQ=255)                                                        aCCGCTGGGCACGCTGAGTGGCCTGATTGAGATCTACTCGAAAACTATCGCCGATATGAACTACGACGATTGTCAGGGGCa          >  1:195116/1‑81 (MQ=255)                                                         ccGCTGGGCACGCTGAGTGGCCTGATTGAGATCTACTCGAAAACTATCGCCGATATGAACTACGACGATTGTCAGGGGCAt         >  2:195124/1‑81 (MQ=255)                                                           gCTGGGCACGCTGAGTGGCCTGATTGAGATCTACTCGAAAACTATCGCCGATATGAACTACGACGATTGTCAGGGGCATcc       <  2:195086/81‑1 (MQ=255)                                                                gCACGCTGAGTGGCCTGATTGAGATCTACTCGAAAACTATCGCCGATATGAACTACGACGATTGTCAGGGGCATCCGAtgt  <  1:195087/81‑1 (MQ=255)                                                                      |                                                                           ACCATCCGCAGATGTTTGTTCGCCACCAGGCATTCCGCGAAGATCCGGATCTCGAACCGCTGGGCACGCCGAGTGGCCTGATTGAGATCTACTCGAAAACTATCGCCGATATGAACTACGACGATTGTCAGGGGCATCCGATGT  >  NC_000913/1061126‑1061269

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑