| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,423,568 | T→C | pseudogene (224/300 nt) S57P (TCC→CCC) |
rzpR → rzoR → |
Rac prophage; putative endopeptidase RzpR Rac prophage; putative lipoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,423,568 | 0 | T | C | 100.0% | 69.0 / NA | 20 | pseudogene (224/300 nt) S57P (TCC→CCC) | rzpR rzoR | Rac prophage; putative endopeptidase RzpR Rac prophage; putative lipoprotein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (2/18); total (2/18) | |||||||||||
GCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCAATACATAACCGAGCAGTGTTTAAA > NC_000913/1423501‑1423640 | gCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCCCCGGGAACGACTg < 2:252208/81‑1 (MQ=255) tGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCCCCGGGAACGACTGGTAATGATGc < 1:252209/81‑1 (MQ=255) aTAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCCCCGGGAACGACTGGTAATGATGCAgg < 2:252211/81‑1 (MQ=255) aTAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCCCCGGGAACGACTGGTAATGATGCAgg < 2:252210/81‑1 (MQ=255) tAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCCCCGGGAACGACTGGTAATGATGCAGGc < 2:252212/81‑1 (MQ=255) aTGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCCCCGGGAACGACTGGTAATGATGCAGGcc < 1:252213/80‑1 (MQ=255) aGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCCCCGGGAACGACTGGTAATGATGCAGGCCCAACt < 2:252214/81‑1 (MQ=255) cTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCCCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGa < 2:252215/81‑1 (MQ=255) cGACTGGCAGACACCGCTGAACGGGATTATTTCACCCCCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCt > 2:252241/1‑81 (MQ=255) gCAGACACCGCTGAACGGGATTATTTCACCCCCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGc < 1:252217/79‑1 (MQ=255) gCAGACACCGCTGAACGGGATTATTTCACCCCCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGc < 1:252216/79‑1 (MQ=255) gCAGACACCGCTGAACGGGATTATTTCACCCCCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCaa < 2:252218/81‑1 (MQ=255) aGACACCGCTGAACGGGATTATTTCACCCCCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCAATa < 1:252219/81‑1 (MQ=255) aaCGGGATTATTTCACCCCCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCAATACATAACCGAg < 2:252220/80‑1 (MQ=255) ttattTCACCCCCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCAATACATAACCGAGCAGTGttt < 2:252221/81‑1 (MQ=255) ttattTCACCCCCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCAATACATAACCGAGCAGTGttt < 2:252222/81‑1 (MQ=255) tattTCACCCCCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCAATACATAACCGAGCAGTGttt > 2:252240/1‑80 (MQ=255) attTCACCCCCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCAATACATAACCGAGCAGTGTTTa < 1:252223/80‑1 (MQ=255) tttCACCCCCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCAATACATAACCGAGCAGTGTTTaaa < 2:252224/81‑1 (MQ=255) tttCACCCCCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCAATACATAACCGAGCAGTGTTTaa < 2:252225/80‑1 (MQ=255) | GCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCAATACATAACCGAGCAGTGTTTAAA > NC_000913/1423501‑1423640 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |