| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,565,199 | T→C | M179V (ATG→GTG) | dosP ← | oxygen‑sensing c‑di‑GMP phosphodiesterase DosP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,565,199 | 0 | T | C | 96.0% | 83.4 / ‑6.4 | 25 | M179V (ATG→GTG) | dosP | oxygen‑sensing c‑di‑GMP phosphodiesterase DosP |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (11/13); minor base A (0/1); total (11/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATAGCAACTGTTGTAAACGAATGCGGTTATCGGCAGGGAATTCAGGAATGTTCAGGAGTGTATCGGGCTGCATACCGCTGGCTTCGCTAATGCAGTAACCAAACATTTCGGTAAATGCGCGATTGCACTGCACAATATGGCGTTCCGG > NC_000913/1565127‑1565274 | aTAGCAACTGTTGTAAACGAATGCGGTTATCGGCAGGGAATTCAGGAATGTTCAGGAGTGTATCGGGCTGCACACCGCTgg > 2:274912/1‑81 (MQ=255) cAACTGTTGTAAACGAATGCGGTTATCGGCAGGGAATTCAGGAATGTTCAGGAGTGTATCGGGCTGCACACCGCTGGCTTc < 2:274866/81‑1 (MQ=255) ttgtAAACGAATGCGGTTATCGGCAGGGAATTCAGGAATGTTCAGGAGTGTATCGGGCTGCACACCGCTGGCTTCGCTAAt > 2:274900/1‑81 (MQ=255) aaCGAATGCGGTTATCGGCAGGGAATTCAGGAATGCTCAGGAGTGTATCGGGCTGCACACCGCTGGCTTCGCTAATGCAg > 2:274901/1‑80 (MQ=255) aaCGAATGAGGTTATCGGCAGGGAATTCAGGAATGTTCAGGAGTGTATCGGGCTGCACACCGCTGGCTTCGCTAATGCAg < 1:274867/80‑1 (MQ=255) aCGAATGCGGTTATCGGCAGGGAATTCAGGAATGTTCAGGAGTGTATCGGGCTGCACACCGCTGGCTTCGCTAATGCAGt > 1:274918/1‑80 (MQ=255) cGAATGCGGTTATCGGCAGGGAATTCAGGAATGTTCAGGAGTGTATCGGGCTGCACACCGCTGGCTTCGCTAATGCAGTaa > 2:274914/1‑81 (MQ=255) tGCGGTTATCGGCAGGGAATTCAGGAATGTTCAGGAGTGTATCGGGCTGCACACCGCTGGCTTCGCTAATGCAGTAACCa > 2:274923/1‑80 (MQ=255) cGGTTATCGGCAGGGAATTCAGGAATGTTCAGGAGTGTATCGGGCTGCACACCGCTGGCTTCGCTAATGCAGTAACCaaa > 1:274917/1‑80 (MQ=255) ggTTATCGGCAGGGAATTCAGGAATGTTCAGGAGTGTATCGGGCTGCACACCGCTGGCTTCGCTAATGCAGTAACCAAACa > 2:274915/1‑81 (MQ=255) ttATCGGCAGGGAATTCAGGAATGTTCAGGAGTGTATCGGGCTGCACACCGCTGGCTTCGCTAATGCAGTAACCAAACAtt > 1:274894/1‑81 (MQ=255) ggCAGGGAATTCAGGAATGTTCAGGAGTGTATCGGGCTGCACACCGCTGGCTTCGCTAATGCAGTAACCAAACATTTCgg > 2:274910/1‑80 (MQ=255) ggCAGGGAATTCAGGAATGTTCAGGAGTGTATCGGGCTGCACACCGCTGGCTTCGCTAATGCAGTAACCAAACATTTCGGt < 2:274868/81‑1 (MQ=255) gCAGGGAATTCAGGAATGTTCAGGAGTGTATCGGGCTGCACACCGCTGGCTTCGCTAATGCAGTAACCAAACATTTCGGt > 1:274916/1‑80 (MQ=255) ggAATTCAGGAATGTTCAGGAGTGTATCGGGCTGCACACCGCTGGCTTCGCTAATGCAGTAACCAAACATTTCGGTAAATg < 2:274869/81‑1 (MQ=255) aaTTCAGGAATGTTCAGGAGTGTATCGGGCTGCACACCGCTGGCTTCGCTAATGCAGTAACCAAACATTTCGGTAAATgcg < 1:274870/81‑1 (MQ=255) aaTTCAGGAATGTTCAGGAGTGTATCGGGCTGCACACCGCTGGCTTCGCTAATGCAGTAACCAAACATTTCGGTAAATgcg < 2:274871/81‑1 (MQ=255) ttCAGGAATGTTCAGGAGTGTATCGGGCTGCACACCGCTGGCTTCGCTAATGCAGTAACCAAACATTTCGGTAAATGcgcg < 2:274872/81‑1 (MQ=255) cAGGAATGTTCAGGAGTGTATCGGGCTGCACACCGCTGGCTTCGCTAATGCAGTAACCAAACATTTCGGTAAATGCGCGa < 2:274873/80‑1 (MQ=255) aGGAATGTTCAGGAGTGTATCGGGCTGCAAACCGCTGGCTTCGCTAATGCAGTAACCAAACATTTCGGTAAATGCGCGAt < 2:274874/80‑1 (MQ=255) gAATGTTCAGGAGTGTATCGGGCTGCACACCGCTGGCTTCGCTAATGCAGTAACCAAACATTTCGGTAAATGCGCGATtgc < 2:274875/81‑1 (MQ=255) tATCGGGCTGCACACCGCTGGCTTCGCTAATGCAGTAACCAAACATTTCGGTAAATGCGCGATTGCACTGCACAATATGGc < 2:274877/81‑1 (MQ=255) tATCGGGCTGCACACCGCTGGCTTCGCTAATGCAGTAACCAAACATTTCGGTAAATGCGCGATTGCACTGCACAATATGGc < 1:274876/81‑1 (MQ=255) gggCTGCACACCGCTGGCTTCGCTAATGCAGTAACCAAACATTTCGGTAAATGCGCGATTGCACTGCACAATATGGCGtt < 1:274878/80‑1 (MQ=255) cTGCACACCGCTGGCTTCGCTAATGCAGTAACCAAACATTTCGGTAAATGCGCGATTGCACTGCACAATATGGCGTTCCgg < 2:274879/81‑1 (MQ=255) | ATAGCAACTGTTGTAAACGAATGCGGTTATCGGCAGGGAATTCAGGAATGTTCAGGAGTGTATCGGGCTGCATACCGCTGGCTTCGCTAATGCAGTAACCAAACATTTCGGTAAATGCGCGATTGCACTGCACAATATGGCGTTCCGG > NC_000913/1565127‑1565274 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |