| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,640,202 | G→A | A55V (GCA→GTA) | ydfR ← | Qin prophage; protein YdfR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,640,202 | 0 | G | A | 100.0% | 59.7 / NA | 18 | A55V (GCA→GTA) | ydfR | Qin prophage; protein YdfR |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (11/7); total (11/7) | |||||||||||
CAGATAAGACTCAACTTTTTCTGACAATTTTTCTGCTACTTCCAGGAAGACTTGCCGGACGCTCCTTCTGGCTGCTGCCTCATAAAACTCCAGCGCAGCTCCTTCAACACGGTCCATGGCGACATCCAGGTCAAAAATTTCACCGTCAAAGC > NC_000913/1640126‑1640277 | cAGATAAGACTCAACTTTTTCTGACAATTTTTCTGCTACTTCCAGGAAGACTTGCCGGACGCTCCTTCTGGCTGCTAcc < 2:285075/79‑1 (MQ=255) gACTCAACTTTTTCTGACAATTTTTCTGCTACTTCCAGGAAGACTTGCCGGACGCTCCTTCTGGCTGCTACCTCATAAAAc < 2:285076/81‑1 (MQ=255) tCAACTTTTTCTGACAATTTTTCTGCTACTTCCAGGAAGACTTGCCGGACGCTCCTTCTGGCTGCTACCTCATAAAACTc > 1:285097/1‑80 (MQ=255) aaCTTTTTCTGACAATTTTTCTGCTACTTCCAGGAAGACTTGCCGGACGCTCCTTCTGGCTGCTACCTCATAAAACTCCAg > 1:285104/1‑81 (MQ=255) aCTTTTTCTGACAATTTTTCTGCTACTTCCAGGAAGACTTGCCGGACGCTCCTTCTGGCTGCTACCTCATAAAACTCCAgc > 2:285103/1‑81 (MQ=255) ttttCTGACAATTTTTCTGCTACTTCCAGGAAGACTTGCCGGACGCTCCTTCTGGCTGCTACCTCATAAAACTCCAgcg > 2:285096/1‑79 (MQ=255) ttCTGACAATTTTTCTGCTACTTCCAGGAAGACTTGCCGGACGCTCCTTCTGGCTGCTACCTCATAAAACTCCAGCGCAg < 1:285077/80‑1 (MQ=255) gACAATTTTTCTGCTACTTCCAGGAAGACTTGCCGGACGCTCCTTCTGGCTGCTACCTCATAAAACTCCAGCGCAGCTCCt > 2:285101/1‑81 (MQ=255) aTTTTTCTGCTACTTCCAGGAAGACTTGCCGGACGCTCCTTCTGGCTGCTACCTCATAAAACTCCAGCGCAGCTCCTTCaa > 1:285094/1‑81 (MQ=255) cTGCTACTTCCAGGAAGACTTGCCGGACGCTCCTTCTGGCTGCTACCTCATAAAACTCCAGCGCAGCTCCTTCAACACGGt > 1:285093/1‑81 (MQ=255) gCTACTTCCAGGAAGACTTGCCGGACGCTCCTTCTGGCTGCTACCTCATAAAACTCCAGCGCAGCTCCTTCAACACGGTc > 2:285098/1‑80 (MQ=255) cTTCCAGGAAGACTTGCCGGACGCTCCTTCTGGCTGCTACCTCATAAAACTCCAGCGCAGCTCCTTCAACACGGTCCATg < 2:285078/80‑1 (MQ=255) ccAGGAAGACTTGCCGGACGCTCCTTCTGGCTGCTACCTCATAAAACTCCAGCGCAGCTCCTTCAACACGGTCCATGGCg < 2:285079/80‑1 (MQ=255) ccAGGAAGACTTGCCGGACGCTCCTTCTGGCTGCTACCTCATAAAACTCCAGCGCAGCTCCTTCAACACGGTCCATGGCGa > 1:285109/1‑81 (MQ=255) gACTTGCCGGACGCTCCTTCTGGCTGCTACCTCATAAAACTCCAGCGCAGCTCCTTCAACACGGTCCATGGCGACATCCAg < 1:285080/81‑1 (MQ=255) aCTTGCCGGACGCTCCTTCTGGCTGCTACCTCATAAAACTCCAGCGCAGCTCCTTCAACACGGTCCATGGCGACATCCAgg < 2:285081/81‑1 (MQ=255) ttGCCGGACGCTCCTTCTGGCTGCTACCTCATAAAACTCCAGCGCAGCTCCTTCAACACGGTCCATGGCGACATCCAGGt > 2:285106/1‑80 (MQ=255) ccTTCTGGCTGCTACCTCATAAAACTCCAGCGCAGCTCCTTCAACACGGTCCATGGCGACATCCAGGTCAAAAATTTCAcc > 2:285105/1‑81 (MQ=255) ctgctaCCTCATAAAACTCCAGCGCAGCTCCTTCAACACGGTCCATGGCGACATCCAGGTCAAAAATTTCACCGTCAAAGc < 2:285082/81‑1 (MQ=255) | CAGATAAGACTCAACTTTTTCTGACAATTTTTCTGCTACTTCCAGGAAGACTTGCCGGACGCTCCTTCTGGCTGCTGCCTCATAAAACTCCAGCGCAGCTCCTTCAACACGGTCCATGGCGACATCCAGGTCAAAAATTTCACCGTCAAAGC > NC_000913/1640126‑1640277 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |