| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,650,137 | C→A | pseudogene (60/921 nt) | ydfE → | Qin prophage; protein YdfE |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,650,137 | 0 | C | A | 100.0% | 52.5 / NA | 16 | pseudogene (60/921 nt) | ydfE | Qin prophage; protein YdfE |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (9/7); total (9/7) | |||||||||||
GTTAAAACAAATGAGTAAAGTCTTTATTTGCGCCGCTATTCCTGACGAACTGGCAACAAGGGAAGAAGGCGCTGTGGCTGTAGCCACAGCCATTGAAGCTGGCGACGAACGCCGTGCTCGAGCAAAATTTCACTGGCAATTCCTGG > NC_000913/1650068‑1650213 | gTTAAAACAAATGAGTAAAGTCTTTATTTGCGCCGCTATTCCTGACGAACTGGCAACAAGGGAAGAAGGAGCTGTGGCTg > 1:286277/1‑80 (MQ=255) aCAAATGAGTAAAGTCTTTATTTGCGCCGCTATTCCTGACGAACTGGCAACAAGGGAAGAAGGAGCTGTGGCTGTAGCca > 1:286281/1‑80 (MQ=255) tAAAGTCTTTATTTGCGCCGCTATTCCTGACGAACTGGCAACAAGGGAAGAAGGAGCTGTGGCTGTAGCCACAGCCATTGa < 2:286254/81‑1 (MQ=255) aaaGTCTTTATTTGCGCCGCTATTCCTGACGAACTGGCAACAAGGGAAGAAGGAGCTGTGGCTGTAGCCACAGCCATTg > 1:286280/1‑79 (MQ=255) tCTTTATTTGCGCCGCTATTCCTGACGAACTGGCAACAAGGGAAGAAGGAGCTGTGGCTGTAGCCACAGCCATTGAAGCTg < 1:286255/81‑1 (MQ=255) tCTTTATTTGCGCCGCTATTCCTGACGAACTGGCAACAAGGGAAGAAGGAGCTGTGGCTGTAGCCACAGCCATTGAAGCTg < 1:286256/81‑1 (MQ=255) cTTTATTTGCGCCGCTATTCCTGACGAACTGGCAACAAGGGAAGAAGGAGCTGTGGCTGTAGCCACAGCCATTGAAGCTgg > 2:286278/1‑81 (MQ=255) aTTTGCGCCGCTATTCCTGACGAACTGGCAACAAGGGAAGAAGGAGCTGTGGCTGTAGCCACAGCCATTGAAGCTGGcgac > 1:286282/1‑81 (MQ=255) cgccgcTATTCCTGACGAACTGGCAACAAGGGAAGAAGGAGCTGTGGCTGTAGCCACAGCCATTGAAGCTGGCGACGAAc < 2:286257/80‑1 (MQ=255) ccgcTATTCCTGACGAACTGGCAACAAGGGAAGAAGGAGCTGTGGCTGTAGCCACAGCCATTGAAGCTGGCGACGAACGcc < 2:286258/81‑1 (MQ=255) ttCCTGACGAACTGGCAACAAGGGAAGAAGGAGCTGTGGCTGTAGCCACAGCCATTGAAGCTGGCGACGAACGCCGTGCt < 1:286259/80‑1 (MQ=255) ttCCTGACGAACTGGCAACAAGGGAAGAAGGAGCTGTGGCTGTAGCCACAGCCATTGAAGCTGGCGACGAACGCCGTGCTc > 2:286284/1‑81 (MQ=255) caacaaGGGAAGAAGGAGCTGTGGCTGTAGCCACAGCCATTGAAGCTGGCGACGAACGCCGTGCTCGAGCAAAATTTCACt > 2:286283/1‑81 (MQ=255) aacaaGGGAAGAAGGAGCTGTGGCTGTAGCCACAGCCATTGAAGCTGGCGACGAACGCCGTGCTCGAGCAAAATTTCACTg > 2:286294/1‑81 (MQ=255) gaagGAGCTGTGGCTGTAGCCACAGCCATTGAAGCTGGCGACGAACGCCGTGCTCGAGCAAAATTTCACTGGCAATTCCTg > 1:286291/1‑81 (MQ=255) aagGAGCTGTGGCTGTAGCCACAGCCATTGAAGCTGGCGACGAACGCCGTGCTCGAGCAAAATTTCACTGGCAATTCCTgg < 2:286260/81‑1 (MQ=255) | GTTAAAACAAATGAGTAAAGTCTTTATTTGCGCCGCTATTCCTGACGAACTGGCAACAAGGGAAGAAGGCGCTGTGGCTGTAGCCACAGCCATTGAAGCTGGCGACGAACGCCGTGCTCGAGCAAAATTTCACTGGCAATTCCTGG > NC_000913/1650068‑1650213 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |