| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,660,717 | G→A | A54A (GCG→GCA) | ynfF → | putative selenate reductase YnfF |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,660,717 | 0 | G | A | 97.4% | 130.8 / ‑4.0 | 39 | A54A (GCG→GCA) | ynfF | putative selenate reductase YnfF |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (22/16); total (23/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 | |||||||||||
GCTGGCAAGCAGTGCTTTCACTCTGCCATTTTCCCAAATGGTCCGGGCGGCAGAGGCTCCGGTAGAAGAGAAAGCGGTCTGGAGTTCCTGCACCGTTAACTGCGGGAGCCGCTGTCTGTTACGTTTGCATGTGAAAGATGACACCGTGTACT > NC_000913/1660642‑1660793 | gcTGGCAAGCAGTGCTTTCACTCTGCCATTTTCCCAAATGGTCCGGGCGGCAGAGGCTCCGGTAGAAGAGAAAGCAGTCTg > 2:287810/1‑81 (MQ=255)gcTGGCAAGCAGTGCTTTCACTCTGCCATTTTCCCAAATGGTCCGGGCGGCAGAGGCTCCGGTAGAAGAGAAAGCAGTCTg < 2:287751/81‑1 (MQ=255) tGGCAAGCAGTGCTTTCACTCTGCCATTTTCCCAAATGGTCCGGGCGGCAGAGGCTCCGGTAGAAGAGAAAGCAGTCTg > 1:287788/1‑79 (MQ=255) gCAAGCAGTGCTTTCACTCTGCCATTTTCCCAAATGGTCCGGGCGGCAGAGGCTCCGGTAGAAGAGAAAGCAGTCTGGAGt > 1:287804/1‑81 (MQ=255) aGTGCTTTCACTCTGCCATTTTCCCAAATGGTCCGGGCGGCAGAGGCTCCGGTAGAAGAGAAAGCAGTCTGGAGTTCCTg > 1:287805/1‑80 (MQ=255) cACTCTGCCATTTTCCCAAATGGTCCGGGCGGCAGAGGCTCCGGTAGAAGAGAAAGCGGTCTGGAGTTCCTGCACCGTTaa > 2:287814/1‑81 (MQ=255) ctctGCCATTTTCCCAAATGGTCCGGGCGGCAGAGGCTCCGGTAGAAGAGAAAGCAGTCTGGAGTTCCTGCACCGTTAACt < 1:287752/81‑1 (MQ=255) ctGCCATTTTCCCAAATGGTCCGGGCGGCAGAGGCTCCGGTAGAAGAGAAAGCAGTCTGGAGTTCCTGCACCGTTAACTGc > 1:287809/1‑81 (MQ=255) tGCCATTTTCCCAAATGGTCCGGGCGGCAGAGGCTCCGGTAGAAGAGAAAGCAGTCTGGAGTTCCTGCACCGTTAACTg < 2:287753/79‑1 (MQ=255) ccATTTTCCCAAATGGTCCGGGCGGCAGAGGCTCCGGTAGAAGAGAAAGCAGTCTGGAGTTCCTGCACCGTTAACTGCggg < 2:287754/81‑1 (MQ=255) aTTTTCCCAAATGGTCCGGGCGGCAGAGGCTCCGGTAGAAGAGAAAGCAGTCTGGAGTTCCTGCACCGTTAACTGCGGGAg < 1:287755/81‑1 (MQ=255) cccAAATGGTCCGGGCGGCAGAGGCTCCGGTAGAAGAGAAAGCAGTCTGGAGTTCCTGCACCGTTAACTGCGGGAGCCGc < 1:287756/80‑1 (MQ=255) ccAAATGGTCCGGGCGGCAGAGGCTCCGGTAGAAGAGAAAGCAGTCTGGAGTTCCTGCACCGTTAACTGCGGGAGCCGctg < 1:287757/81‑1 (MQ=255) ccAAATGGTCCGGGCGGCAGAGGCTCCGGTAGAAGAGAAAGCAGTCTGGAGTTCCTGCACCGTTAACTGCGGGAGCCGctg < 1:287758/81‑1 (MQ=255) cAAATGGTCCGGGCGGCAGAGGCTCCGGTAGAAGAGAAAGCAGTCTGGAGTTCCTGCACCGTTAACTGCGGGAGCCGctgt > 1:287799/1‑81 (MQ=255) aaaTGGTCCGGGCGGCAGAGGCTCCGGTAGAAGAGAAAGCAGTCTGGAGTTCCTGCACCGTTAACTGCGGGAGCCGctgtc > 1:287800/1‑81 (MQ=255) aaaTGGTCCGGGCGGCAGAGGCTCCGGTAGAAGAGAAAGCAGTCTGGAGTTCCTGCACCGTTAACTGCGGGAGCCGctgtc < 1:287759/81‑1 (MQ=255) aaTGGTCCGGGCGGCAGAGGCTCCGGTAGAAGAGAAAGCAGTCTGGAGTTCCTGCACCGTTAACTGCGGGAGCCGctgtct > 1:287794/1‑81 (MQ=255) aaTGGTCCGGGCGGCAGAGGCTCCGGTAGAAGAGAAAGCAGTCTGGAGTTCCTGCACCGTTAACTGCGGGAGCCGctgtct < 2:287760/81‑1 (MQ=255) aTGGTCCGGGCGGCAGAGGCTCCGGTAGAAGAGAAAGCAGTCTGGAGTTCCTGCACCGTTAACTGCGGGAGCCGctgtctg > 1:287823/1‑81 (MQ=255) tGGTCCGGGCGGCAGAGGCTCCGGTAGAAGAGAAAGCAGTCTGGAGTTCCTGCACCGTTAACTGCGGGAGCCGctgtctgt > 2:287815/1‑81 (MQ=255) ggTCCGGGCGGCAGAGGCTCCGGTAGAAGAGAAAGCAGTCTGGAGTTCCTGCACCGTTAACTGCGGGAGCCGctgtctgt > 1:287802/1‑80 (MQ=255) gTCCGGGCGGCAGAGGCTCCGGTAGAAGAGAAAGCAGTCTGGAGTTCCTGCACCGTTAACTGCGGGAGCCGCTGTCTGTTa > 2:287798/1‑81 (MQ=255) cGGGCGGCAGAGGCTCCGGTAGAAGAGAAAGCAGTCTGGAGTTCCTGCACCGTTAACTGCGGGAGCCGCTGTCTGTTACGt > 2:287791/1‑81 (MQ=255) ggcggcAGAGGCTCCGGTAGAAGAGAAAGCAGTCTGGAGTTCCTGCACCGTTAACTGCGGGAGCCGCTGTCTGTTACGttt > 2:287820/1‑81 (MQ=255) cggcAGAGGCTCCGGTAGAAGAGAAAGCAGTCTGGAGTTCCTGCACCGTTAACTGCGGGAGCCGCTGTCTGTTACGTTTg > 2:287806/1‑80 (MQ=255) gcAGAGGCTCCGGTAGAAGAGAAAGCAGTCTGGAGTTCCTGCACCGTTAACTGCGGGAGCCGCTGTCTGTTACGTTTGCAt < 2:287761/81‑1 (MQ=255) ggCTCCGGTAGAAGAGAAAGCAGTCTGGAGTTCCTGCACCGTTAACTGCGGGAGCCGCTGTCTGTTACGTTTGCATGTGa > 2:287796/1‑80 (MQ=255) tCCGGTAGAAGAGAAAGCAGTCTGGAGTTCCTGCACCGTTAACTGCGGGAGCCGCTGTCTGTTACGTTTGCATGTGa > 1:287797/1‑77 (MQ=255) cGGTAGAAGAGAAAGCAGTCTGGAGTTCCTGCACCGTTAACTGCGGGAGCCGCTGTCTGTTACGTTTGCATGTGAAAGAt > 2:287807/1‑80 (MQ=255) gTAGAAGAGAAAGCAGTCTGGAGTTCCTGCACCGTTAACTGCGGGAGCCGCTGTCTGTTACGTTTGCATGTGAAAGATGac < 1:287762/81‑1 (MQ=255) gTAGAAGAGAAAGCAGTCTGGAGTTCCTGCACCGTTAACTGCGGGAGCCGCTGTCTGTTACGTTTGCATGTGAAAGATGa > 1:287825/1‑80 (MQ=255) agaagaGAAAGCAGTCTGGAGTTCCTGCACCGTTAACTGCGGGAGCCGCTGTCTGTTACGTTTGCATGTGAAAGATGacac > 1:287817/1‑81 (MQ=255) agaagaGAAAGCAGTCTGGAGTTCCTGCACCGTTAACTGCGGGAGCCGCCGTCTGTTACGTTTGCATGTGAAAGATGacac > 2:287816/1‑81 (MQ=255) gaagaGAAAGCAGTCTGGAGTTCCTGCACCGTTAACTGCGGGAGCCGCTGTCTGTTACGTTTGCATGTGAAAGATGACAcc < 1:287763/81‑1 (MQ=255) agaAAGCAGTCTGGAGTTCCTGCACCGTTAACTGCGGGAGCCGCTGTCTGTTACGTTTGCATGTGAAAGATGACACCgtgt < 1:287764/81‑1 (MQ=255) gaAAGCAGTCTGGAGTTCCTGCACCGTTAACTGCGGGAGCCGCTGTCTGTTACGTTTGCATGTGAAAGATGACACCGTGTa > 1:287803/1‑81 (MQ=255) aaGCAGTCTGGAGTTCCTGCACCGTTAACTGCGGGAGCCGCTGTCTGTTACGTTTGCATGTGAAAGATGACACCGTGTACt < 1:397754/81‑1 (MQ=255) aaGCAGTCTGGAGTTCCTGCACCGTTAACTGCGGGAGCCGCTGTCTGTTACGTTTGCATGTGAAAGATGACACCGTGTACt < 1:287765/81‑1 (MQ=255) | GCTGGCAAGCAGTGCTTTCACTCTGCCATTTTCCCAAATGGTCCGGGCGGCAGAGGCTCCGGTAGAAGAGAAAGCGGTCTGGAGTTCCTGCACCGTTAACTGCGGGAGCCGCTGTCTGTTACGTTTGCATGTGAAAGATGACACCGTGTACT > NC_000913/1660642‑1660793 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |