| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,911,371 | C→A | P366T (CCG→ACG) | yebQ → | putative transporter YebQ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,911,371 | 0 | C | A | 96.5% | 89.5 / ‑3.9 | 29 | P366T (CCG→ACG) | yebQ | putative transporter YebQ |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base A (18/10); minor base G (1/0); total (19/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.54e-01 | |||||||||||
GGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACCTGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCG > NC_000913/1911293‑1911447 | gggTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACCTGCGGATATCAATATTATCTGGACg < 2:326182/81‑1 (MQ=255) gttCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACCTGCGGATATCAATATTATCTGGACgatgat > 1:326203/1‑81 (MQ=255) gttCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACCTGCGGATATCAATATTATCTGGACgatgat > 1:326210/1‑81 (MQ=255) atcatGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACCTGCGGATATCAATATTATCTGGACGATGATCTTa > 2:326232/1‑81 (MQ=255) tcatGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACCTGCGGATATCAATATTATCTGGACGATGATCTTAt > 2:326221/1‑81 (MQ=255) tcatGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACCTGCGGATATCAATATTATCTGGACGATGATCTTAt > 2:326208/1‑81 (MQ=255) gggCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACCTGCGGATATCAATATTATCTGGACGATGATCTTATGTGGTGCTGGa > 1:326216/1‑81 (MQ=255) ttttCCCTGGTTCTGCTGCCCGCGTCACCTGCGGATATCAATATTATCTGGACGATGATCTTATGTGGTGCTGGATTTgg < 1:326184/80‑1 (MQ=255) ttttCCCTGGTTCTGCTGCCCGCGTCACCTGCGGATATCAATATTATCTGGACGATGATCTTATGTGGTGCTGGATTTg < 2:326183/79‑1 (MQ=255) ttttCCCTGGTTCTGCTGCCCGCGTCACCTGCGGATATCAATATTATCTGGACGATGATCTTATGTGGTGCTGGATTTGGc > 1:326233/1‑81 (MQ=255) ccTGGTTCTGCTGCCCGCGTCACCTGCGGATATCAATATTATCTGGACGATGATCTTATGTGGTGCTGGATTTGGCTTAtt > 2:326228/1‑81 (MQ=255) cTGGTTCTGCTGCCCGCGTCACCTGCGGATATCAATATTATCTGGACGATGATCTTATGTGGTGCTGGATTTGGCTTATTc < 2:326185/81‑1 (MQ=255) cTGGTTCTGCTGCCCGCGTCACCTGCGGATATCAATATTATCTGGACGATGATCTTATGTGGTGCTGGATTTGGCTTATTc > 2:326212/1‑81 (MQ=255) ggTTCTGCTGCCCGCGTCACCTGCGGATATCAATATTATCTGGACGATGATCTTATGTGGTGCTGGATTTGGCTTATTc > 1:326227/1‑79 (MQ=255) gTTCTGCTGCCCGCGTCACCTGCGGATATCAATATTATCTGGACGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAg > 1:326217/1‑81 (MQ=255) ctgctgCCCGCGTCACCTGCGGATATCAATATTATCTGGACGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCa > 2:326213/1‑81 (MQ=255) gctgcCCGCGTCACCTGCGGATATCAATATTATCTGGGCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCAcc > 2:326229/1‑81 (MQ=255) ctgcCCGCGTCACCTGCGGATATCAATATTATCTGGACGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCAccc < 2:326186/81‑1 (MQ=255) cccGCGTCACCTGCGGATATCAATATTATCTGGACGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCTCCCAAt < 2:326187/81‑1 (MQ=255) gcgTCACCTGCGGATATCAATATTATCTGGACGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAAc > 1:598753/1‑81 (MQ=255) gTCACCTGCGGATATCAATATTATCTGGACGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACca > 1:326225/1‑81 (MQ=255) aCCTGCGGATATCAATATTATCTGGACGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCacac > 2:326223/1‑81 (MQ=255) cGGATATCAATATTATCTGGACGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCat < 2:326188/79‑1 (MQ=255) tatCAATATTATCTGGACGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTAc > 1:326231/1‑81 (MQ=255) cAATATTATCTGGACGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTc > 1:326226/1‑81 (MQ=255) aaTATTATCTGGACGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTcc < 2:326189/81‑1 (MQ=255) tattatCTGGACGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCGGTCACCCAATAACCACACCATTATTACCTCcgc < 1:326190/81‑1 (MQ=255) atCTGGACGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGcc < 2:326191/80‑1 (MQ=255) cTGGACGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTcg > 2:326218/1‑81 (MQ=255) | GGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACCTGCGGATATCAATATTATCTGGCCGATGATCTTATGTGGTGCTGGATTTGGCTTATTCCAGTCACCCAATAACCACACCATTATTACCTCCGCGCCTCG > NC_000913/1911293‑1911447 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |