| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,103,170 | T→C | pseudogene (220/446 nt) | wbbL ← | interrupted rhamnosyltransferase WbbL |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,103,170 | 0 | T | C | 100.0% | 47.2 / NA | 15 | pseudogene (220/446 nt) | wbbL | interrupted rhamnosyltransferase WbbL |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (12/3); total (12/3) | |||||||||||
GCAAATCATCATGCTTCATGATGATATCGGGATTCAAAAACAAAATGTAATCATCATCTGCGGGTCTATATTTTTCCTTTACATACGCCACCGCAATATTATTATTATGACCAAAGCCGTATACACCTCCACTAATATAGTCCAGGCCTGCA > NC_000913/2103092‑2103243 | gCAAATCATCATGCTTCATGATGATATCGGGATTCAAAAACAAAATGTAATCATCATCTGCGGGTCTATATTTTTCCTCTa > 2:357606/1‑81 (MQ=255) cATGATGATATCGGGATTCAAAAACAAAATGTAATCATCATCTGCGGGTCTATATTTTTCCTCTACATACGCCACCGCaa > 2:357610/1‑80 (MQ=255) cATGATGATATCGGGATTCAAAAACAAAATGTAATCATCATCTGCGGGTCTATATTTTTCCTCTACATACGCCACCGCa < 1:357594/79‑1 (MQ=255) gatATCGGGATTCAAAAACAAAATGTAATCATCATCTGCGGGTCTATATTTTTCCTCTACATACGCCACCGCAAtattat > 2:357601/1‑80 (MQ=255) atCGGGATTCAAAAACAAAATGTAATCATCATCTGCGGGTCTATATTTTTCCTCTACATACGCCACCGCAAtattattat > 2:357615/1‑80 (MQ=255) cGGGATTCAAAAACAAAATGTAATCATCATCTGCGGGTCTATATTTTTCCTCTACATACGCCACCGCAAtattattattat > 2:357619/1‑81 (MQ=255) aaaaaCAAAATGTAATCATCATCTGCGGGTCTATATTTTTCCTCTACATACGCCACCGCAATATTATTATTATGACCaaa < 1:357595/80‑1 (MQ=255) aaaCAAAATGTAATCATCATCTGCGGGTCTATATTTTTCCTCTACATACGCCACCGCAATATTATTATTATGACCAAAGcc > 2:357611/1‑81 (MQ=255) aaaCAAAATGTAATCATCATCTGCGGGTCTATATTTTTCCTCTACATACGCCACCGCAATATTATTATTATGACCAAAGcc > 2:357632/1‑81 (MQ=255) aaaaTGTAATCATCATCTGCGGGTCTATATTTTTCCTCTACATACGCCACCGCAATATTATGATTATGACCAAAGCCGta > 2:357608/1‑80 (MQ=255) aaTGTAATCATCATCTGCGGGTCTATATTTTTCCTCTACATACGCCACCGCAATATTATTATTATGACCAAAGCCGtata > 1:357616/1‑80 (MQ=255) atcatcTGCGGGTCTATATTTTTCCTCTACATACGCCACCGCAATATTATTATTATGACCAAAGCCGTATACACCTCCAc > 1:357614/1‑80 (MQ=255) gTCTATATTTTTCCTCTACATACGCCACCGCAATATTATTATTATGACCAAAGCCGTATACACCTCCACTAATATAGTCCa < 1:357596/81‑1 (MQ=255) tttttCCTCTACATACGCCACCGCAATATTATTATTATGACCAAAGCCGTATACACCTCCACTAATATAGTCCAGGCCTg > 1:357620/1‑80 (MQ=255) tttCCTCTACATACGCCACCGCAATATTATTATTATGACCAAAGCCGTATACACCTCCACTAATATAGTCCAGGCCTGCa > 1:357612/1‑80 (MQ=255) | GCAAATCATCATGCTTCATGATGATATCGGGATTCAAAAACAAAATGTAATCATCATCTGCGGGTCTATATTTTTCCTTTACATACGCCACCGCAATATTATTATTATGACCAAAGCCGTATACACCTCCACTAATATAGTCCAGGCCTGCA > NC_000913/2103092‑2103243 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |