Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 2,105,766 | T→C | I98V (ATT→GTT) | wbbI ← | beta‑1,6‑galactofuranosyltransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 2,105,766 | 0 | T | C | 85.7% | 12.0 / ‑3.2 | 7 | I98V (ATT→GTT) | wbbI | beta‑1,6‑galactofuranosyltransferase |
Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (5/1); total (6/1) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.53e-01 |
ATTGTGACTTATGACCATATCACAGGTAGCAAGCCGCACAGAATCACTACCCCCTCCTCCTCTTAATTCATCAATATCATGAATCAGAGGTACTATTCTAAATTTTAGAAGGCGGTGAAAGAATGACAATATATGCCAAAATGGTT > NC_000913/2105692‑2105837 | aTTGTGACTTATGACCATATCACAGGTAGCAAGCCGCACAGAATCACTACCCCCTCCTCCTCTTAATTCATCAACATCATg < 2:357806/81‑1 (MQ=255) gACCATATCACAGGTAGCAAGCCGCACAGAATCACTACCCCCTCCTCCTCTTAATTCATCAACATCATGAATCAGAGGTAc > 1:357814/1‑81 (MQ=255) cacaGGTAGCAAGCCGCACAGAATCACTACCCCCTCCTCCTCTTAATTCATCAACATCATGAATCAGAGGTACTATTCTa > 2:357819/1‑80 (MQ=255) ccGCACAGAATCACTACCCCCTCCTCCTCTTAATTCATCAACATCATGAATCAGAGGTACTATTCTAAATTTTAGAAGGCg > 1:357820/1‑81 (MQ=255) gCACAGAATCACTACCCCCTCCTCCTCTTAATTCATCAACATCATGAATCAGAGGTACTATTCTAAATTTTAGAAGGCGGt > 2:357813/1‑81 (MQ=255) aTCACTACCCCCTCCTCCTCTTAATTCATCAACATCATGAATCAGAGGTACTATTCTAAATTTTAGAAGGCGGTGAAAGaa > 1:357815/1‑81 (MQ=255) aTTCATCAATATCATGAATCAGAGGTACTATTCTAAATTTTAGAAGGCGGTGAAAGAATGACAATATATGCCAAAATGGtt > 1:357821/1‑81 (MQ=255) | ATTGTGACTTATGACCATATCACAGGTAGCAAGCCGCACAGAATCACTACCCCCTCCTCCTCTTAATTCATCAATATCATGAATCAGAGGTACTATTCTAAATTTTAGAAGGCGGTGAAAGAATGACAATATATGCCAAAATGGTT > NC_000913/2105692‑2105837 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |