| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 290,392 | C→T | intergenic (‑87/‑118) | argF ← / → ykgS | CP4‑6 prophage; ornithine carbamoyltransferase ArgF/CP4‑6 prophage; protein YkgS |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 290,392 | 0 | C | T | 100.0% | 33.3 / NA | 11 | intergenic (‑87/‑118) | argF/ykgS | CP4‑6 prophage; ornithine carbamoyltransferase ArgF/CP4‑6 prophage; protein YkgS |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (5/6); total (5/6) | |||||||||||
CGCATGGCGAACGCCACTTATTGAATTAAAATTCACTTTATATGTGTAATTATTCATTTGCAACCCCATTTCACAATTCTTTCTTACAAAGGTGGAGGCAAACCCGTCCGTGTGTGAAAATAATCGTATCTGCCTCCGATTCTCTGCAGAAG > NC_000913/290314‑290465 | cGCATGGCGAACGCCACTTATTGAATTAAAATTCACTTTATATGTGTAATTATTCATTTGCAACCCCATTTCACAAttttt > 1:57688/1‑81 (MQ=255) gCATGGCGAACGCCACTTATTGAATTAAAATTCACTTTATATGTGTAATTATTCATTTGCAACCCCATTTCACAAtttttt > 1:57696/1‑81 (MQ=255) cATGGCGAACGCCACTTATTGAATTAAAATTCACTTTATATGTGTAATTATTCATTTGCAACCCCATTTCACAAttttttc < 2:57670/81‑1 (MQ=255) gCGAACGCCACTTATTGAATTAAAATTCACTTTATATGTGTAATTATTCATTTGCAACCCCATTTCACAATTTTTTCTTa < 1:57671/80‑1 (MQ=255) aaCGCCACTTATTGAATTAAAATTCACTTTATATGTGTAATTATTCATTTGCAACCCCATTTCACAATTTTTTCTTACa > 1:57698/1‑79 (MQ=255) gCCACTTATTGAATTAAAATTCACTTTATATGTGTAATTATTCATTTGCAACCCCATTTCACAATTTTTTCTTACAAAGGt > 2:57692/1‑81 (MQ=255) cTTATTGAATTAAAATTCACTTTATATGTGTAATTATTCATTTGCAACCCCATTTCACAATTTTTTCTTACAAAGGTGGAg < 1:57672/81‑1 (MQ=255) atGTGTAATTATTCATTTGCAACCCCATTTCACAATTTTTTCTTACAAAGGTGGAGGCAAACCCGTCCGTGTGTGAAaat > 2:57694/1‑80 (MQ=255) attattCATTTGCAACCCCATTTCACAATTTTTTCTTACAAAGGTGGAGGCAAACCCGTCCGTGTGTGAAAATAATCGTAt > 2:57697/1‑81 (MQ=255) ttattCATTTGCAACCCCATTTCACAATTTTTTCTTACAAAGGTGGAGGCAAACCCGTCCGTGTGTGAAAATAATCGTATc > 2:57691/1‑81 (MQ=255) aTTTGCAACCCCATTTCACAATTTTTTCTTACAAAGGTGGAGGCAAACCCGTCCGTGTGTGAAAATAATCGTATCTGCCt < 1:57673/80‑1 (MQ=255) tttGCAACCCCATTTCACAATTTTTTCTTACAAAGGTGGAGGCAAACCCGTCCGTGTGTGAAAATAATCGTATCTGCCTcc < 2:57674/81‑1 (MQ=255) cacaATTTTTTCTTACAAAGGTGGAGGCAAACCCGTCCGTGTGTGAAAATAATCGTATCTGCCTCCGATTCTCTgcagaa < 1:57675/80‑1 (MQ=255) acaATTTTTTCTTACAAAGGTGGAGGCAAACCCGTCCGTGTGAGAAAATAATCGTATCTGCCTCCGATTCTCTgcagaag < 2:57676/80‑1 (MQ=255) | CGCATGGCGAACGCCACTTATTGAATTAAAATTCACTTTATATGTGTAATTATTCATTTGCAACCCCATTTCACAATTCTTTCTTACAAAGGTGGAGGCAAACCCGTCCGTGTGTGAAAATAATCGTATCTGCCTCCGATTCTCTGCAGAAG > NC_000913/290314‑290465 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |