| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,560,414 | T→C | V53A (GTT→GCT) | yffL → | CPZ‑55 prophage; uncharacterized protein YffL |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,560,414 | 0 | T | C | 100.0% | 53.0 / NA | 16 | V53A (GTT→GCT) | yffL | CPZ‑55 prophage; uncharacterized protein YffL |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (11/5); total (11/5) | |||||||||||
TATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAAACAAACAATGATGTTCGTCAATTTTTAAACAAAATTAACGAGTTACGGAATAAAGCACCCAAAAACGAAGAGACTAAACACGAAGAACA > NC_000913/2560341‑2560489 | tATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAAACAAACAATGATGCTCGTCaa > 2:436632/1‑81 (MQ=255) gaAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAAACAAACAATGATGCTCGTCAAtttt > 1:436651/1‑80 (MQ=255) gaAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAAACAAACAATGATGCTCGTCAAtttt > 2:436638/1‑80 (MQ=255) aaCAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAAACAAACAATGATGCTCGTCAATTTTTaa < 2:436616/81‑1 (MQ=255) aaGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAAACAAACAATGATGCTCGTCAATTTTTAAAc > 1:436643/1‑80 (MQ=255) aGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAAACAAACAATGATGCTCGTCAATTTTTAAACaa < 2:436617/81‑1 (MQ=255) aGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAAACAAACAATGATGCTCGTCAATTTTTAAACAAAATTaa < 2:436618/81‑1 (MQ=255) ggAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAAACAAACAATGATGCTCGTCAATTTTTAAACAAAATTAAc > 1:436646/1‑81 (MQ=255) tctcATGTCTGATATGCTAGCAGTAGAACAAGAAACAAACAATGATGCTCGTCAATTTTTAAACAAAATTAACGAGTTAc < 1:436619/80‑1 (MQ=255) tcATGTCTGATATGCTAGCAGTAGAACAAGAAACAAACAATGATGCTCGTCAATTTTTAAACAAAATTAACGAGTTACgg > 1:436648/1‑80 (MQ=255) cTAGCAGTAGAACAAGAAACAAACAATGATGCTCGTCAATTTTTAAACAAAATTAACGAGTTACGGAATAAAGCACCCaa > 2:436636/1‑80 (MQ=255) gAACAAGAAACAAACAATGATGCTCGTCAATTTTTAAACAAAATTAACGAGTTACGGAATAAAGCACCCAAAAACGAagag < 2:436620/81‑1 (MQ=255) aCAAGAAACAAACAATGATGCTCGTCAATTTTTAAACAAAATTAACGAGTTACGGAATAAAGCACCCAAAAACGAAGAGAc > 1:436635/1‑81 (MQ=255) aacaaacaATGATGCTCGTCAATTTTTAAACAAAATTAACGAGTTACGGAATAAAGCACCCAAAAACGAAGAGACTAAaca > 2:436642/1‑81 (MQ=255) acaaTGATGCTCGTCAATTTTTAAACAAAATTAACGAGTTACGGAATAAAGCACCCAAAAACGAAGAGACTAAACACg > 1:436639/1‑78 (MQ=255) tgatgCTCGTCAATTTTTAAACAAAATTAACGAGTTACGGAATAAAGCACCCAAAAACGAAGAGACTAAACACGAAGAaca > 1:436670/1‑81 (MQ=255) | TATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAAACAAACAATGATGTTCGTCAATTTTTAAACAAAATTAACGAGTTACGGAATAAAGCACCCAAAAACGAAGAGACTAAACACGAAGAACA > NC_000913/2560341‑2560489 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |