| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,022,455 | G→A | E380E (GAG→GAA) | xdhD → | fused putative xanthine/hypoxanthine oxidase: molybdopterin‑binding subunit and Fe‑S binding subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,022,455 | 0 | G | A | 97.3% | 126.7 / NA | 37 | E380E (GAG→GAA) | xdhD | fused putative xanthine/hypoxanthine oxidase: molybdopterin‑binding subunit and Fe‑S binding subunit |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (15/21); total (15/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CAAAAATATCGCCGCCAGTATTCATGGTCATATTGGCGATATGGACAAAGGCTTTGCCGATGCCGATGTGATCATTGAGCGAACCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCTTTACTCGTATGGACGGC > NC_000913/3022377‑3022527 | cAAAAATATCGCCGCCAGTATTCATGGTCATATTGGCGATATGGACAAAGGCTTTGCCGATGCCGATGTGATCATTGAACg < 1:523282/81‑1 (MQ=255) aaaaTATCGCCGCCAGTATTCATGGTCATATTGGCGATATGGACAAAGGCTTTGCCGATGCCGATGTGATCATTGAACGaa > 2:523316/1‑81 (MQ=255) aaTATCGCCGCCAGTATTCATGGTCATATTGGCGATATGGACAAAGGCTTTGCCGATGCCGATGTGATCATTGAACGAAcc < 2:523283/81‑1 (MQ=255) atatCGCCGCCAGTATTCATGGTCATATTGGCGATATGGACAAAGGCTTTGCCGATGCCGATGTGATCATTGAACGAACCt < 2:523284/81‑1 (MQ=255) tatCGCCGCCAGTATTCATGGTCATATTGGCGATATGGACAAAGGCTTTGCCGATGCCGATGTGATCATTGAACGAACCta < 1:523285/81‑1 (MQ=255) tCGCCGCCAGTATTCATGGTCATATTGGCGATATGGACAAAGGCTTTGCCGATGCCGATGTGATCATTGAGCGAACCtat < 2:523286/80‑1 (MQ=255) tCGCCGCCAGTATTCATGGTCATATTGGCGATATGGACAAAGGCTTTGCCGATGCCGATGTGATCATTGAACGAACCtata < 1:523288/81‑1 (MQ=255) tCGCCGCCAGTATTCATGGTCATATTGGCGATATGGACAAAGGCTTTGCCGATGCCGATGTGATCATTGAACGAACCtat < 1:523287/80‑1 (MQ=255) ccgccAGTATTCATGGTCATATTGGCGATATGGACAAAGGCTTTGCCGATGCCGATGTGATCATTGAACGAACCTATAACt < 2:523289/81‑1 (MQ=255) ccAGTATTCATGGTCATATTGGCGATATGGACAAAGGCTTTGCCGATGCCGATGTGATCATTGAACGAACCTATAACTCaa < 2:523290/81‑1 (MQ=255) ccAGTATTCATGGTCATATTGGCGATATGGACAAAGGCTTTGCCGATGCCGATGTGATCATTGAACGAACCTATAACTCaa > 1:523337/1‑81 (MQ=255) aGTATTCATGGTCATATTGGCGATATGGACAAAGGCTTTGCCGATGCCGATGTGATCATTGAACGAACCTATAACTCAACg < 1:523291/81‑1 (MQ=255) cATGGTCATATTGGCGATATGGACAAAGGCTTTGCCGATGCCGATGTGATCATTGAACGAACCTATAACTCAACGCAAgc < 1:523292/80‑1 (MQ=255) cATGGTCATATTGGCGATATGGACAAAGGCTTTGCCGATGCCGATGTGATCATTGAACGAACCTATAACTCAACGCAAgc < 1:523293/80‑1 (MQ=255) aTGGTCATATTGGCGATATGTACAAAGGCTTTGCCGATGCCGATGTGATCATTGAACGAACCTATAACTCAACGCAAgcg > 2:523306/1‑80 (MQ=255) gTCATATTGGCGATATGGACAAAGGCTTTGCCGATGCCGATGTGATCATTGAACGAACCTATAACTCAACGCAAGCgcag > 2:523336/1‑80 (MQ=255) atTGGCGATATGGACAAAGGCTTTGCCGATGCCGATGTGATCATTGAACGAACCTATAACTCAACGCAAGCGCAGCAGTGc > 2:523319/1‑81 (MQ=255) ggCGATATGGACAAAGGCTTTGCCGATGCCGATGTGATCATTGAACGAACCTATAACTCAACGCAAGCGCAGCAGTGccc > 1:523325/1‑80 (MQ=255) gCGATATGGACAAAGGCTTTGCCGATGCCGATGTGATCATTGAACGAACCTATAACTCAACGCAAGCGCAGCAGTGCCCg < 2:523294/80‑1 (MQ=255) atGGACAAAGGCTTTGCCGATGCCGATGTGATCATTGAACGAACCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGa > 2:523328/1‑80 (MQ=255) ggACAAAGGCTTTGCCGATGCCGATGTGATCATTGAACGAACCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGaaa > 1:523341/1‑80 (MQ=255) aaGGCTTTGCCGATGCCGATGTGATCATTGAACGAACCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACata < 1:523295/81‑1 (MQ=255) aGGCTTTGCCGATGCCGATGTGATCATTGAACGAACCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACatat < 1:523297/81‑1 (MQ=255) aGGCTTTGCCGATGCCGATGTGATCATTGAACGAACCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACatat < 1:523296/81‑1 (MQ=255) cTTTGCCGATGACGATGTGATCATTGAACGAACCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTg > 2:523348/1‑81 (MQ=255) tttGCCGATGCCGATGTGATCATTGAACGAACCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGc > 1:523331/1‑81 (MQ=255) ttGCCGATGCCGATGTGATCATTGAACGAACCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCt > 2:523335/1‑81 (MQ=255) ttGCCGATGCCGATGTGATCATTGAACGAACCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCt > 2:523347/1‑81 (MQ=255) tgccgatgccgaTGTGATCATTGAACGAACCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCt < 2:523298/80‑1 (MQ=255) ccgatgccgatgTGATCATTGAACGAACCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCttt < 2:523299/80‑1 (MQ=255) ccgatgccgatgTGATCATTGAACGAACCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCttt < 1:523300/80‑1 (MQ=255) gatgccgatgTGATCATTGAACGAACCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCTTTACt > 1:523333/1‑81 (MQ=255) tgccgatgTGATCATTGAACGAACCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACATTTCTGCTTTACTCg < 2:523301/81‑1 (MQ=255) tgccgatgTGATCATTGAACGAACCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCTTTACTCg > 1:523343/1‑81 (MQ=255) atgTGATCATTGAACGAACCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCTTTACTCGTATgg < 2:523302/81‑1 (MQ=255) aTCATTGAACGAACCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCTTTACTCGTATGGACGGc > 1:523361/1‑81 (MQ=255) aTCATTGAACGAACCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCTTTACTCGTATGGACGGc < 1:523303/81‑1 (MQ=255) | CAAAAATATCGCCGCCAGTATTCATGGTCATATTGGCGATATGGACAAAGGCTTTGCCGATGCCGATGTGATCATTGAGCGAACCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCTTTACTCGTATGGACGGC > NC_000913/3022377‑3022527 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |