Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,088,585	C→T	A101V (GCT→GTT)	galP →	galactose:H(+) symporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,088,585	0	C	T	100.0%	93.2 / NA	27	A101V (GCT→GTT)	galP	galactose:H(+) symporter
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (11/16);  total (11/16)

CTTTAAACTCGGGCGCAAAAAGAGCCTGATGATCGGCGCAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGCTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCTACTGGGGCTGGCGGTGGGTGTGGCCTCTTATACCGCAC  >  NC_000913/3088511‑3088662                                                                           |                                                                              cTTTAAACTCGGGCGCAAAAAGAGCCTGATGATCGGCGCAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGTTGCGcc                                                                         <  2:536714/81‑1 (MQ=255) cTTTAAACTCGGGCGCAAAAAGAGCCTGATGATCGGCGCAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGTTGCGcc                                                                         <  2:536715/81‑1 (MQ=255)    tAAACTCGGGCGCAAAAAGAGCCTGATGATCGGCGCAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGTTGCGCCaa                                                                       <  2:536716/80‑1 (MQ=255)           gggCGCAAAAAGAGCCTGATGATCGGCGCAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGa                                                                <  2:536717/80‑1 (MQ=255)              cgcAAAAAGAGCCTGATGATCGGCGCAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTa                                                            >  2:536751/1‑81 (MQ=255)                      gagCCTGATGATCGGCGCAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCt                                                    <  2:536718/81‑1 (MQ=255)                       agCCTGATGATCGGCGCAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCtt                                                   <  2:536720/81‑1 (MQ=255)                       agCCTGATGATCGGCGCAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCtt                                                   <  2:536719/81‑1 (MQ=255)                             atgatCGGCGCAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCcgc                                             <  1:536721/81‑1 (MQ=255)                               gatCGGCGCAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGt                                           >  2:536759/1‑81 (MQ=255)                               gatCGGCGCAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGt                                           >  1:536756/1‑81 (MQ=255)                                   ggCGCAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGTTGCGCCAATCGTTGAAGTACTGATTCTTTCCCGCGTTCTa                                       >  2:536749/1‑81 (MQ=255)                                   ggCGCAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCt                                        <  1:536722/80‑1 (MQ=255)                                     cgcAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCTACt                                     >  2:536755/1‑81 (MQ=255)                                      gcAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCTACTg                                    >  2:536757/1‑81 (MQ=255)                                        aaTTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCTACTggg                                  <  1:536723/81‑1 (MQ=255)                                           tttgtttgTTGCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCTACTGGGGCt                               >  2:536765/1‑81 (MQ=255)                                            ttgtttgtTGCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCTACTGGGGCTg                              >  2:536767/1‑81 (MQ=255)                                              gtttgttGCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCTACTGGGGCTgg                             <  2:536724/80‑1 (MQ=255)                                                 tgttgCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCTACTGGGGCTGGCgg                          <  1:536725/80‑1 (MQ=255)                                                  gttgCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCTACTGGGGCTGGCggt                         <  1:536726/80‑1 (MQ=255)                                                       cGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCTACTGGGGCTGGCGGTGGgtgt                   <  1:536727/81‑1 (MQ=255)                                                           tCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCTACTGGGGCTGGCGGTGGGTGTGGcc               >  1:536774/1‑81 (MQ=255)                                                             gCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCTACTGGGGCTGGCGGTGGGTGTGGCctc             <  1:536728/81‑1 (MQ=255)                                                                 ttCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCTACTGGGGCTGGCGGTGGGTGTGGCCTCtt           <  2:536729/79‑1 (MQ=255)                                                                    tctGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCTACTGGGGCTGGCGGTGGGTGTGGCCTCTTATacc      >  2:536778/1‑81 (MQ=255)                                                                        cGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCTACTGGGGCTGGCGGTGGGCGTGGCCTCTTATaccgcac  >  1:536766/1‑81 (MQ=255)                                                                           |                                                                              CTTTAAACTCGGGCGCAAAAAGAGCCTGATGATCGGCGCAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGCTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCTACTGGGGCTGGCGGTGGGTGTGGCCTCTTATACCGCAC  >  NC_000913/3088511‑3088662

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑