Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	412,396	A→G	L29P (CTG→CCG)	araJ ←	putative transport protein AraJ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	412,396	0	A	G	100.0%	100.1 / NA	29	L29P (CTG→CCG)	araJ	putative transport protein AraJ
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (12/17);  total (12/17)

GCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCAAAG  >  NC_000913/412318‑412462                                                                               |                                                                   gcACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCGGc                                                                  <  2:79779/81‑1 (MQ=255)  cACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCGGCt                                                                 <  2:79780/81‑1 (MQ=255)   aCCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCGGCTc                                                                >  2:79820/1‑81 (MQ=255)     cGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCGGCTCCg                                                              >  1:79819/1‑81 (MQ=255)       accaccaccCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCGGCTCCGTg                                                            <  2:79781/81‑1 (MQ=255)         caccaccCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCGGCTCCGTGAg                                                          <  2:79782/81‑1 (MQ=255)                  cAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCGGCTCCGTGAGCACGCCCa                                                  >  2:79832/1‑80 (MQ=255)                     tGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCGGCTCCGTGAGCACGCCCATAAt                                              <  1:79783/81‑1 (MQ=255)                        ataataCGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCGGCTCCGTGAGCACGCCCATAATGcc                                           <  2:79784/81‑1 (MQ=255)                            taCGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCGGCTCCGTGAGCACGCCCATAATGCCAAAt                                       >  1:79827/1‑81 (MQ=255)                              cGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCGGCTCCGTGAGCACGCCCATAATGCCAAAtt                                      <  2:79785/80‑1 (MQ=255)                                agaTCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCGGCTCCGTGAGCACGCCCATAATGCCAAATTCgg                                   >  2:79834/1‑81 (MQ=255)                                     atatGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCGGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATc                              >  2:79831/1‑81 (MQ=255)                                       atGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCGGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATccc                            >  1:79839/1‑81 (MQ=255)                                        tGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCGGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATccc                            <  1:79786/80‑1 (MQ=255)                                        tGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCGGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATccc                            >  1:79824/1‑80 (MQ=255)                                          cccGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCGGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCcca                          <  1:79787/80‑1 (MQ=255)                                            cggcggCAGGAATCGAAATTCCTACGTTATGCGCCGGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCccaaac                       >  2:79830/1‑81 (MQ=255)                                              gcggcAGGAATCGAAATTCCTACGTTATGCGCCGGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCccaaacca                     <  1:79788/81‑1 (MQ=255)                                                   aGGAATCGAAATTCCTACGTTATGCGCCGGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGt                <  1:79789/81‑1 (MQ=255)                                                      aaTCGAAATTCCTACGTTATGCGCCGGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGcc             >  2:79829/1‑81 (MQ=255)                                                       aTCGAAATTCCTACGTTATGCGCCGGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGccc            <  1:79790/81‑1 (MQ=255)                                                        tCGAAATTCCTACGTTATGCGCCGGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGccc            >  2:79822/1‑80 (MQ=255)                                                        tCGAAATTCCTACGTTATGCGCCGGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCa           <  2:79791/81‑1 (MQ=255)                                                              ttCCTACGTTATGCGCCGGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGcc      >  2:79840/1‑80 (MQ=255)                                                              ttCCTACGTTATGCGCCGGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCa     <  1:79792/81‑1 (MQ=255)                                                                 cTACGTTATGCGCCGGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCaaa   <  2:79793/80‑1 (MQ=255)                                                                 cTACGTTATGCGCCGGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCAAAg  <  2:743644/81‑1 (MQ=255)                                                                 cTACGTTATGCGCCGGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCAAAg  <  2:79794/81‑1 (MQ=255)                                                                               |                                                                   GCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTCGGCCATCCCCAAACCAAACGTGCCCAGAGCCAAAG  >  NC_000913/412318‑412462

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑