| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,103,865 | C→T | V371M (GTG→ATG) | cpxA ← | sensory histidine kinase CpxA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,103,865 | 0 | C | T | 97.1% | 109.5 / ‑3.9 | 35 | V371M (GTG→ATG) | cpxA | sensory histidine kinase CpxA |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (11/22); total (11/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.92e-01 | |||||||||||
CGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGG > NC_000913/4103787‑4103937 | cgcgATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCAttt > 1:745762/1‑81 (MQ=255) gcgATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCAttt > 1:745771/1‑80 (MQ=255) gcgATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCATTTc < 1:745712/81‑1 (MQ=255) cgATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCATTTCa < 1:745713/81‑1 (MQ=255) aTCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCATTTCAAt > 2:745777/1‑81 (MQ=255) ccGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCATTTCaa < 2:745715/75‑1 (MQ=255) ccGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCATTTCAATCTTc < 1:745714/80‑1 (MQ=255) cGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCATTTCAATCTTCg > 2:745756/1‑80 (MQ=255) cGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCATTTCAATCTTCg > 2:745760/1‑80 (MQ=255) aCGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCATTTCAATCTTCGTATGGGaa > 2:745769/1‑81 (MQ=255) aCGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCATTTCAATCTTCGTATGGGaa < 2:745716/81‑1 (MQ=255) cGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCATTTCAATCTTCGTATGGGAAt < 1:745717/81‑1 (MQ=255) gCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCATTTCAATCTTCGTATGGGAAt > 1:745774/1‑80 (MQ=255) gCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCATTTCAATCTTCGTATGGGAATa < 2:745718/81‑1 (MQ=255) cAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCATTTCAATCTTCGTATGGGAATAAc < 1:745720/81‑1 (MQ=255) cAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCATTTCAATCTTCGTATGGGAATAAc < 1:745719/81‑1 (MQ=255) aGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCATTTCAATCTTCGTATGGGAATAACg > 1:745765/1‑81 (MQ=255) ggACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCATTTCAATCTTCGTATGGGAATAACGc < 2:745721/81‑1 (MQ=255) gACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCATTTCAATCTTCGTATGGGAATAACg > 2:745722/1‑79 (MQ=255) ccATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCATTTCAATCTTCGTATGGGAATAACGCaga < 1:745723/81‑1 (MQ=255) gtcgtcCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCATTTCAATCTTCGTATGGGAATAACGCAGAGCAt < 2:745724/80‑1 (MQ=255) ccGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCATTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACaa > 2:745778/1‑81 (MQ=255) tAATGGTGATACCGTCTTTATCTACCGCAAAGCCCATTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGt < 1:745725/81‑1 (MQ=255) aTGGTGATACCGTCTTTATCTACCGCAAAGCCCATTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGttt > 1:745776/1‑81 (MQ=255) aTGGTGATACCGTCTTTATCTACCGCAAAGCCCATTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGttt < 1:745726/81‑1 (MQ=255) gTGATACCGTCTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTc < 2:745727/80‑1 (MQ=255) aaaCCGTCTAAATAAACCGCAAAGCCCAATGCAATAGGCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAg < 1:873710/78‑1 (MQ=255) aTACCGTCTTTATCTACCGCAAAGCCCATTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAgc < 2:745728/81‑1 (MQ=255) aTACCGTCTTTATCTACCGCAAAGCCCATTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAgc < 2:745729/81‑1 (MQ=255) aTACCGTCTTTATCTACCGCAAAGCCCATTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAg < 2:745730/80‑1 (MQ=255) ccGTCTTTATCTACCGCAAAGCCCATTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAgcgc < 2:745733/80‑1 (MQ=255) ccGTCTTTATCTACCGCAAAGCCCATTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAgcgc < 1:745732/80‑1 (MQ=255) ccGTCTTTATCTACCGCAAAGCCCATTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCa < 1:745731/81‑1 (MQ=255) cTTTATCTACCGCAAAGCCCATTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACttt > 2:745772/1‑81 (MQ=255) tATCTACCGCAAAGCCCATTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCAAGCGCACTTTcc < 1:745734/80‑1 (MQ=255) aCCGCAAAGCCCATTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCg > 1:745770/1‑81 (MQ=255) aaaGCCCATTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCgg < 1:745735/81‑1 (MQ=255) | CGCGATCTTCCGGGCTAACGCCAGGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGG > NC_000913/4103787‑4103937 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |