| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 522,992 | C→T | intergenic (+162/‑269) | ybbP → / → rhsD | putative ABC transporter membrane subunit YbbP/protein RhsD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 522,992 | 0 | C | T | 100.0% | 18.4 / NA | 7 | intergenic (+162/‑269) | ybbP/rhsD | putative ABC transporter membrane subunit YbbP/protein RhsD |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (1/6); total (1/6) | |||||||||||
CTATCTTTCTATTGCTGATATTAATCTGAATCGGTGGAGTTTATTGATTTTAAATATAGCCCTACAAAAATAACTCAGACTAATAAAATCATAAATCATATGCGTTGAATGGATATTATC > NC_000913/522928‑523047 | cTATCTTTCTATTGCTGATATTAATCTGAATCGGTGGAGTTTATTGATTTTAAATATAGCCCTATAAAAATAACTCAGAc < 1:100979/80‑1 (MQ=255) tCTTTCTATTGCTGATATTAATCTGAATCGGTGGAGTTTATTGATTTTAAATATAGCCCTATAAAAATAACTCAGACta < 2:100980/79‑1 (MQ=255) tCTATTGCTGATATTAATCTGAATCGGTGGAGTTTATTGATTTTAAATATAGCCCTATAAAAATAACTCAGACtaataa < 1:100982/79‑1 (MQ=255) tCTATTGCTGATATTAATCTGAATCGGTGGAGTTTATTGATTTTAAATATAGCCCTATAAAAATAACTCAGACtaat < 2:100981/77‑1 (MQ=255) aTCTGAATCGGTGGAGTTTATTGATTTTAAATATAGCCCTATAAAAATAACTCAGACTAATAAAATCATAAATCATATGc < 1:100983/80‑1 (MQ=255) aaTCGGTGGAGTTTATTGATTTTAAATATAGCCCTATAAAAATAACTCAGACTAATAAAATCATAAATCATATGCGTTg < 2:100984/79‑1 (MQ=255) ttATTGATTTTAAATATAGCCCTATAAAAATAACTCAGACTAATAAAATCATAAATCATATGCGTTGAATGGATATTATc > 2:100997/1‑80 (MQ=255) | CTATCTTTCTATTGCTGATATTAATCTGAATCGGTGGAGTTTATTGATTTTAAATATAGCCCTACAAAAATAACTCAGACTAATAAAATCATAAATCATATGCGTTGAATGGATATTATC > NC_000913/522928‑523047 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |