Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 2,737,118 IS1 (+) +8 bp intergenic (+235/‑29) bamD → / → raiA outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1978503 =NA (NA)31 (0.860) 24/160 0.6 100% noncoding (768/768 nt) IS1 repeat region
?NC_000913 2737118 = 0 (0.000)intergenic (+235/‑36) bamD/raiA outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor
* ? NC_000913 = 1979270NA (NA)33 (0.920) 27/160 0.4 100% noncoding (1/768 nt) IS1 repeat region
?NC_000913 = 2737125 0 (0.000)intergenic (+242/‑29) bamD/raiA outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor

ACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTT  >  NC_000913/1978423‑1978581
                                                                                |                                                                              
acaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATgg                                                                                >  1:381044/1‑81 (MQ=255)
  aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGt                                                                              <  2:381002/81‑1 (MQ=255)
    aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTaa                                                                            >  2:381031/1‑81 (MQ=255)
    aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTaa                                                                            >  2:381040/1‑81 (MQ=255)
      aaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAAt                                                                           >  2:381037/1‑80 (MQ=255)
        cGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGAc                                                                        >  1:381027/1‑81 (MQ=255)
              ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAAc                                                                  >  1:381035/1‑81 (MQ=255)
                ggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACtt                                                                <  2:381003/81‑1 (MQ=255)
                ggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACt                                                                 >  1:381038/1‑80 (MQ=255)
                ggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACt                                                                 >  2:381041/1‑80 (MQ=255)
                   tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTAtt                                                             >  1:381029/1‑81 (MQ=255)
                      gATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGAt                                                          <  1:381004/81‑1 (MQ=255)
                           tCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAgtg                                                      <  2:381005/80‑1 (MQ=255)
                             aataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGttt                                                   >  2:381030/1‑81 (MQ=255)
                             aataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGtt                                                    <  2:381006/80‑1 (MQ=255)
                                aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTAt                                                >  2:381036/1‑81 (MQ=255)
                                      tGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAg                                          <  2:381007/81‑1 (MQ=255)
                                           cAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATaa                                      <  2:381008/80‑1 (MQ=255)
                                            aGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATg                                    >  2:381042/1‑81 (MQ=255)
                                            aGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATg                                    >  2:381049/1‑81 (MQ=255)
                                                   acaAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAt                              >  1:381043/1‑80 (MQ=255)
                                                     aaaaCACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGAc                           <  1:381009/81‑1 (MQ=255)
                                                      aaaCACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACt                          >  1:381051/1‑81 (MQ=255)
                                                      aaaCACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACt                          >  2:718917/1‑81 (MQ=255)
                                                            tCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCa                    >  1:381039/1‑81 (MQ=255)
                                                                  aCTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGc              >  2:381050/1‑81 (MQ=255)
                                                                        cATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCAGATGACTTTGTCATGCAGCTCCAcc        <  1:381010/81‑1 (MQ=255)
                                                                            aaTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAt     <  1:381011/80‑1 (MQ=35)
                                                                             aTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAttt   >  1:381056/1‑81 (MQ=33)
                                                                              tGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAtttt  >  2:381065/1‑81 (MQ=32)
                                                                                |                                                                              
ACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTT  >  NC_000913/1978423‑1978581

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.