| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 168,071 | +AGAA | coding (588/2244 nt) | fhuA → | ferrichrome outer membrane transporter/phage receptor |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 168064 | 0 (0.000) | 30 (0.950) +GAAA |
20/138 | 0.5 | 100% | coding (581/2244 nt) | fhuA | ferrichrome outer membrane transporter/phage receptor |
| ? | NC_000913 | 168065 = | 0 (0.000) | coding (582/2244 nt) | fhuA | ferrichrome outer membrane transporter/phage receptor | |||||
CGGTTTCCGTGCTTTACGGTAAAAGCAGTCCTGGCGGCCTGTTGAATATGGTCAGCAAGCGTCCGACCACCGAACCGCTGAAAGAAGTTCAGTTTAAAGCCGGTACTGACAGCCTGTTCCAGACTGGTTTTGACTTTAGCGATTCGTTGGATGATGA > NC_000913/167986‑168142 | ttccgtgctttacggtaaaagcagtcgtggcggcctgttgaatatggtcagcaagcgtccgaccaccgaaccgctgaaag > 1:29636‑M2/80‑80 (MQ=255) ccgtgctttacggtaaaagcagtcctggcggcctgttgaatatggtcagcaagcgtccgaccaccgaaccgctgaaaga > 2:29642‑M2/78‑79 (MQ=255) ccgtgctttacggtaaaagcagtcctggcggcctgttgaatatggtcagcaagcgtccgaccaccgaaccgctgaaaga > 2:29633‑M2/78‑79 (MQ=255) cgtgctttacggtaaaagcagtcctggcggcctgttgaatatggtcagcaagcgtccgaccaccgaaccgctgaaagaaag < 1:29606‑M2/5‑1 (MQ=255) gtgctttacggtaaaagcagtcctggcggcctgttgaatatggtcagcaagcgtccgaccaccgaaccgctgaaagaaag > 1:29635‑M2/76‑80 (MQ=255) aaaagcagtcctggcggcctgttgaatatggtcagcaagcgtccgaccaccgaaccgctgaaaGAAAGAAGTTCAGTTTa > 1:29650‑M2/64‑80 (MQ=255) gcagtcctggcggcctgttgaatatggtcagcaagcgtccgaccaccgaaccgctgaaaGAAAGAAGTTCAGTTTAAAGcc > 2:29639‑M2/60‑81 (MQ=255) gcagtcctggcggcctgttgaatatggtcagcaagcgtccgaccaccgaaccgctgaaaGAAAGAAGTTCAGTTTAAAGcc < 2:29607‑M2/22‑1 (MQ=255) cggcctgttgaatatggtcagcaagcgtccgaccaccgaaccgctgaaaGAAAGAAGTTCAGTTTAAAGCCGGTACTGACa < 1:29608‑M2/32‑1 (MQ=255) ctgttgaatatggtcagcaagcgtccgaccaccgaaccgctgaaaGAAAGAAGTTCAGTTTAAAGCCGGTACTGACAGCCt < 1:29609‑M2/36‑1 (MQ=255) ttgaatatggtcagcaagcgtccgaccaccgaaccgctgaaaGAAAGAAGTTCAGTTTAAAGCCGGTACTGACAGCCTg < 1:29610‑M2/37‑1 (MQ=255) aatatggtcagcaagcgtccgaccaccgaaccgctgaaaGAAAGAAGTTCAGTTTAAAGCCGGTACTGACAGCCTGTTc > 2:29646‑M2/40‑79 (MQ=255) gtcagcaagcgtccgaccaccgaaccgctgaaaGAAAGAAGTTCAGTTTAAAGCCGGTACTGACAGCCTGTTCCAGACTgg < 2:29611‑M2/48‑1 (MQ=255) cagcaagcgtccgaccaccgaaccgctgaaaGAAAGAAGTTCAGTTTAAAGCCGGTACTGACAGCCTGTTCCAGACTGGtt > 2:29640‑M2/32‑81 (MQ=255) agcaagcgtccgaccaccgaaccgctgaaaGAAAGAAGTTCAGTTTAAAGCCGGTACTGACAGCCTGTTCCAGACTGGtt < 2:29612‑M2/50‑1 (MQ=255) agcaagcgtccgaccaccgaaccgctgaaaGAAAGAAGTTCAGTTTAAAGCCGGTACTGACAGCCTGTTCCAGACTGGtt < 2:29613‑M2/50‑1 (MQ=255) aagcgtccgaccaccgaaccgctgaaaGAAAGAAGTTCAGTTTAAAGCCGGTACTGACAGCCTGTTCCAGACTGGTTTTGa > 1:29648‑M2/28‑81 (MQ=255) aagcgtccgaccaccgaaccgctgaaaGAAAGAAGTTCAGTTTAAAGCCGGTACTGACAGCCTGTTCCAGACTGGTTTTGa > 2:29637‑M2/28‑81 (MQ=255) aagcgtccgaccaccgaaccgctgaaaGAAAGAAGTTCAGTTTAAAGCCGGTACTGACAGCCTGTTCCAGACTGGTTTTGa > 1:29645‑M2/28‑81 (MQ=255) aagcgtccgaccaccgaaccgctgaaaGAAAGAAGTTCAGTTTAAAGCCGGTACTGACAGCCTGTTCCAGACTGGTTTTGa > 1:29644‑M2/28‑81 (MQ=255) gcgtccgaccaccgaaccgctgaaaGAAAGAAGTTCAGTTTAAAGCCGGTACTGACAGCCTGTTCCAGACTGGTTTTGACt < 2:29614‑M2/56‑1 (MQ=255) tccgaccaccgaaccgctgaaaGAAAGAAGTTCAGTTTAAAGCCGGTACTGACAGCCTGTTCCAGACTGGTTTTGACTTTa < 2:29615‑M2/59‑1 (MQ=255) ccgaccaccgaaccgctgaaaGAAAGAAGTTCAGTTTAAAGCCGGTACTGACAGCCTGTTCCAGACTGGTTTTGACTTTAg > 2:29647‑M2/22‑81 (MQ=255) accaccgaaccgctgaaaGAAAGAAGTTCAGTTTAAAGCCGGTACTGACAGCCTGTTCCAGACTGGTTTTGACTTTAGCGa < 1:29616‑M2/63‑1 (MQ=255) accgaaccgctgaaaGAAAGAAGTTCAGTTTAAAGCCGGTACTGACAGCCTGTTCCAGACTGGTTTTGACTTTAGCGATTc < 2:29617‑M2/66‑1 (MQ=255) ccgaaccgctgaaaGAAAGAAGTTCAGTTTAAAGCCGGTACTGACAGCCTGTTCCAGACTGGTTTTGACTTTAGCGATTCg > 2:29643‑M2/15‑81 (MQ=255) cgctgaaaGAAAGAAGTTCAGTTTAAAGCCGGTACTGACAGCCTGTTCCAGACTGGTTTTGACTTTAGCGATTCGTTGgat < 1:29618‑M2/73‑1 (MQ=255) gaaaGAAAGAAGTTCAGTTTAAAGCCGGTACTGACAGCCTGTTCCAGACTGGTTTTGACTTTAGCGATTCGTTGgatgat > 2:29675‑M2/5‑80 (MQ=255) aaaGAAAGAAGTTCAGTTTAAAGCCGGTACTGACAGCCTGTTCCAGACTGGTTTTGACTTTAGCGATTCGTTGGAtgatga < 2:29619‑M2/78‑1 (MQ=255) | CGGTTTCCGTGCTTTACGGTAAAAGCAGTCCTGGCGGCCTGTTGAATATGGTCAGCAAGCGTCCGACCACCGAACCGCTGAAAGAAGTTCAGTTTAAAGCCGGTACTGACAGCCTGTTCCAGACTGGTTTTGACTTTAGCGATTCGTTGGATGATGA > NC_000913/167986‑168142 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |