| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 572471 | 175 (0.800) | 45 (0.330) +TGATCTTACCCAGCAATAGTGGACACGCGGCTAA |
13/118 | 17.1 | 36.8% | coding (6/456 nt) | ybcN | DLP12 prophage; uncharacterized protein |
| ? | NC_000913 | 1095438 = | 69 (0.320) | noncoding (65/1258 nt) | IS3 | repeat region | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/572399‑572471‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGCCTG > NC_000913/1095438‑1095509 |||||||||||||||||||||||||||||||||| CTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGCACTGATCTTACCACGCAA > 2:5101668/1‑89 CAGATACATAAATGCACCTGCAAGTCTTTGCATCTAGCGTTTGACCTCTACGGAGGGGAAGCGTGAACTGATCTTACCCAGCACTActa > 2:1646725/1‑86 CAGAAATGCACCTGCAATTCTTTACATCTAGAGTTTGACCTCTGCGGAGGGGAAGCGTGAAATGATCTTACCCAGCAATAGTAGAAACa > 2:4534723/1‑88 TTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTT < 1:928335/100‑1 TTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTT < 1:2350885/100‑1 CTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCAC < 1:1648628/100‑1 GCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTA < 1:1089909/100‑1 GCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTA < 1:3078387/100‑1 GCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGT < 2:3849879/89‑1 CGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAG < 1:1754164/100‑1 CGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAG < 1:220199/100‑1 GTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGC < 1:3350947/100‑1 GTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGC < 1:839574/100‑1 GTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGC < 1:2861299/100‑1 GTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGC < 1:1652428/100‑1 GTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGC < 1:1376973/100‑1 GTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTT < 2:4452625/89‑1 TTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCC < 1:271792/100‑1 TTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCG < 1:3931620/100‑1 TTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCG < 1:5033321/100‑1 TTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCG < 1:1661697/100‑1 TTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCG < 1:1351726/100‑1 TGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGC < 1:5468349/100‑1 GACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCG < 1:3201270/100‑1 GACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCG < 1:4560861/100‑1 GACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCG < 1:49060/100‑1 CCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCAC < 2:4914076/89‑1 CTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACT < 2:3516187/89‑1 CTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTA < 2:895567/89‑1 TGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACGCGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAG < 2:4285285/89‑1 GCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGC < 2:3107976/89‑1 GCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGC < 2:1820050/89‑1 GCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGC < 2:3732603/89‑1 GCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGC < 2:2710484/89‑1 CGGAGGGGAAGCGTGAACTGATCTTACCCAGCGATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCC < 2:2457685/89‑1 CGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCC < 2:4975000/89‑1 CGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCC < 2:3699901/89‑1 GGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCG < 2:3077140/89‑1 GGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCG < 2:1342594/89‑1 GGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCG < 2:4002594/89‑1 GGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCG < 2:3201093/89‑1 GGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCG < 2:3103347/89‑1 GGAGGGGAAGCGAGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCG < 2:756433/89‑1 GAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGC < 2:3435831/89‑1 AGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCG < 2:5182971/89‑1 gcACTGATCTTACCCAGCAATAATGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGA < 1:4169725/98‑1 AACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTG < 2:2119848/89‑1 AACTGATCTTACCCAGCAATAGTGGACACGCAGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCTGCGTGTCCACTATTG < 2:3325028/89‑1 TGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG < 1:1240228/100‑1 TACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTtcacg > 1:4780332/1‑95 |||||||||||||||||||||||||||||||||| CTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/572399‑572471‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGCCTG > NC_000913/1095438‑1095509 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |