mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 30.3% | 214.6 / 115.4 | 167 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 222 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 80 (0.690) | 35 (0.340) | 30/268 | 4.7 | 35.3% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 57 (0.550) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 85 (0.730) | 27 (0.260) | 25/268 | 5.8 | 28.4% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 60 (0.580) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1050651 | 126 (1.090) | 10 (0.140) +58 bp |
4/184 | 11.4 | 11.5% | intergenic (+121/+312) | insB1/cspH | IS1 transposase B/stress protein, member of the CspA‑family |
| ? | NC_000913 | = 3584199 | NA (NA) | pseudogene (4/114 nt) | yrhA | pseudogene, interrupted by IS1E | |||||
| * | ? | NC_000913 | 279162 = | NA (NA) | 4 (0.060) +61 bp |
3/178 | 12.0 | 5.1% | intergenic (‑1/+16) | afuB/insB1 | pseudogene, CP4‑6 prophage; ferric iron ABC transporter permease gene fragment;Phage or Prophage Related/IS1 transposase B |
| ? | NC_000913 | = 1050651 | 126 (1.090) | intergenic (+121/+312) | insB1/cspH | IS1 transposase B/stress protein, member of the CspA‑family | |||||
| * | ? | NC_000913 | = 225998 | NA (NA) | 12 (0.110) | 10/292 | 12.1 | NA | noncoding (240/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 226015 | NA (NA) | noncoding (257/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 3726897 | 214 (1.850) | 12 (0.110) | 8/278 | 12.7 | 5.6% | intergenic (+15/+27) | wecH/yiaA | O‑acetyltransferase for enterobacterial common antigen (ECA)/YiaAB family inner membrane protein, tandem domains |
| ? | NC_000913 | = 3726905 | 205 (1.910) | intergenic (+23/+19) | wecH/yiaA | O‑acetyltransferase for enterobacterial common antigen (ECA)/YiaAB family inner membrane protein, tandem domains | |||||
| * | ? | NC_000913 | = 16583 | NA (NA) | 9 (0.080) | 8/290 | 13.2 | NA | noncoding (1197/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | = 16604 | NA (NA) | noncoding (1218/1345 nt) | IS186 | repeat region | |||||
| * | ? | NC_000913 | 3423373 = | 98 (0.850) | 17 (0.150) | 8/296 | 13.4 | 13.2% | intergenic (+179/+50) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4213159 | 126 (1.100) | noncoding (120/120 nt) | rrfE | 5S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | 2900520 = | 105 (0.910) | 8 (0.070) | 7/278 | 13.4 | 7.6% | intergenic (‑247/‑72) | ygcW/yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein |
| ? | NC_000913 | 2900560 = | 98 (0.910) | intergenic (‑287/‑32) | ygcW/yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein | |||||
| * | ? | NC_000913 | 2729475 = | 54 (0.470) | 15 (0.140) | 7/280 | 13.4 | 20.2% | intergenic (‑31/+141) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | = 4168363 | 68 (0.630) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||