New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 652782	44 (0.790)	10 (0.210)	9/236	4.9	34.7%	coding (1961/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL
	?	NC_002947	= 4808159	0 (0.000)					intergenic (‑268/‑287)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
Rejected: Coverage evenness skew score above cutoff.

GGAACAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCG‑CCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAATCTCGCTCACCGC  >  NC_002947/652636‑652930                                                                                                                                                   |                                                                                                                                                      ggAACAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCa                                                                                                                                                      <  6:285140/148‑1 (MQ=255) ggAACAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCa                                                                                                                                                      <  2:100911/148‑1 (MQ=255)  gAACAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTACCCGGCATGATAACGGATGCGCAGGATTAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGa                                                                                                                                                    >  7:334800/1‑149 (MQ=255)    aCAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGAcc                                                                                                                                                  <  3:176217/149‑1 (MQ=255)        cATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGa                                                                                                                                                    <  6:192218/143‑1 (MQ=255)        cATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGa                                                                                                                                                    >  5:192218/1‑143 (MQ=255)        cATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTg                                                                                                                                               >  1:74152/1‑148 (MQ=255)         aTGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGaa                                                                                                                                             >  2:268328/1‑149 (MQ=255)                 cAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCa                                                                                                                                     <  5:168477/149‑1 (MQ=255)                           aTGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTTGCACCG‑CCCGGtt                                                                                                                          <  7:265971/149‑1 (MQ=255)                           aTGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCG‑CCCGGtt                                                                                                                          <  4:8152/149‑1 (MQ=255)                           aTGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCG‑CCCGGtt                                                                                                                          <  4:237192/149‑1 (MQ=255)                              gCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCG‑CCCGGTTCAg                                                                                                                       <  7:250274/149‑1 (MQ=255)                              gCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCG‑CCCGGTTCAg                                                                                                                       <  4:238051/149‑1 (MQ=255)                                 gACTCGCGAGTTGGAACGTGCCCGGCATGATATCGGATGCGCAGGAATAATTGGCCCGAAACAATCGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCTGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCG‑CCCGGTTCAGCTc                                                                                                                    <  5:153875/149‑1 (MQ=255)                                       cgAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCG‑CCCGGTTCAGCTCACCGcc                                                                                                              >  7:276157/1‑149 (MQ=255)                                           gTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCG‑CCCGGTTCAGCTCACCGCCCAg                                                                                                           <  4:12804/148‑1 (MQ=255)                                              gAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCG‑CCCGGTTCAGCTCACCGCCCAGGCt                                                                                                        >  4:156109/1‑148 (MQ=255)                                                                           aGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCt                                                                                                <  1:223040/128‑1 (MQ=255)                                                                           aGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCG‑CCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCt                                                                                                >  2:223040/1‑127 (MQ=255)                                                                           aGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGAGGCGCTCGATCTCAGACCCTGAACGCTCGCACCG‑CCCGGTTCATCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTc                                                                          >  7:342968/1‑149 (MQ=255)                                                                            ggAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCG‑CCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCg                                                                         >  1:178755/1‑149 (MQ=255)                                                                             gAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCG‑CCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGc                                                                        >  6:78643/1‑149 (MQ=255)                                                                                  atTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCG‑CCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATg                                                                   <  3:156109/149‑1 (MQ=255)                                                                                       cccGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCG‑CCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTg                                                              >  3:372909/1‑149 (MQ=255)                                                                                        ccGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCG‑CCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTg                                                              >  5:284154/1‑148 (MQ=255)                                                                                           aaacaaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCG‑CCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAgg                                                          <  2:74152/149‑1 (MQ=255)                                                                                           aaacaaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCG‑CCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAgg                                                          <  1:268328/149‑1 (MQ=255)                                                                                            aacaaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCG‑CCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGt                                                         >  6:374770/1‑149 (MQ=255)                                                                                             acaaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCG‑CCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGtt                                                        <  7:192691/149‑1 (MQ=255)                                                                                                      ggAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCG‑CCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCAcc                                               <  6:284154/149‑1 (MQ=255)                                                                                                          cGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCG‑CCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGt                                           >  7:270291/1‑149 (MQ=255)                                                                                                           gggTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCG‑CCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGtt                                          <  2:178755/149‑1 (MQ=255)                                                                                                              tttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCG‑CCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGt                                       <  7:256483/149‑1 (MQ=255)                                                                                                                    cgcgAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCG‑CCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATcc                                 >  3:332391/1‑149 (MQ=255)                                                                                                                    cgcgAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCG‑CCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATcc                                 >  6:149234/1‑149 (MQ=255)                                                                                                                      tcgaGCGCCGCCCGCGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCG‑CCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCcgc                               >  1:369408/4‑149 (MQ=255)                                                                                                                      cgAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCG‑CCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCACCTCGCCAATGCGCTGCAGCTTGTCTTCAACCAGTTCGTGAATCcg                                >  6:104733/1‑148 (MQ=255)                                                                                                                        gaGCGCCGCCCGCGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCG‑CCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCcgctc                             >  7:236252/2‑149 (MQ=255)                                                                                                                             ccgcGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCG‑CCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAAAGCGCTGCAGGTTGTCTTCACCCAGTTAGTGAATCCGCTCGCtgt                        >  7:349915/1‑149 (MQ=255)                                                                                                                                       ggcgCTCGATCTCAGACCCTGAACGCTCGCACCG‑CCCGGTTCAGCTCACCGCCCAGGATCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGaa               >  2:271574/1‑148 (MQ=255)                                                                                                                                          gcTCGATCTCAGACCCTGAACGCTCGCACCG‑CCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAAtc             >  7:196528/1‑147 (MQ=255)                                                                                                                                              gATCTCAGACCCTGAACGCTCGCACCG‑CCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAATCTCGCt        >  2:354473/1‑148 (MQ=255)                                                                                                                                                   cAGACCCTGAACGCTCGCACCG‑CCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAATCTCGCTCACcgc  >  7:93741/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                      GGAACAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCG‑CCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAATCTCGCTCACCGC  >  NC_002947/652636‑652930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.