New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1731163 =	47 (0.850)	6 (0.140)	6/220	5.7	13.4%	intergenic (‑76/+115)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
	?	NC_002947	1731255 =	40 (0.900)					intergenic (‑168/+23)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGTGACCGAGGGGCGACGGATCAGGTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAA‑GGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTC  >  NC_002947/1731016‑1731307                                                                                                                                                     |                                                                                                                                                 ggTGACCGAGGGGCGACGGATCAGGTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAA‑GGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGc                                                                                                                                                 >  7:54936/1‑149 (MQ=255)      ccGAGGGGGGCCGGATCAGGGCGCCGGCCAGTGGATGGGTTGCCTAGAGCGCGGCAGGGGCCGTCATGGGGTACTCCGGTGCAAGGCAA‑GGCGGGTAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCAtt                                                                                                                                            <  4:84134/149‑1 (MQ=255)          ggggCGACGGATCAGGTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAATCGGGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTcgc                                                                                                                                         <  1:294557/149‑1 (MQ=255)           ggggGACGTATCAGGTCGCAGGCCAGTTGACGGGTAGCGGAGCGCTGGGCCGGGGCGGTCATGGGGGACTCCGGGGCAAGGCAA‑GGCGGGGAAATCTGAGGGGCGTTATCTTATATCAACTGGTTTCGGGCAGCACGGCCCATTCGCgg                                                                                                                                       <  1:328918/149‑1 (MQ=255)                  ggATCTGGTCGCAGGCCTGTTGAAGGGTTGGCGATAGCTGGGCTGGGGCCGTAATGGGGGACTCCGGGGCAAGGCAT‑GGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGcc                                                                                                                                <  2:269900/149‑1 (MQ=255)                        ggTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAA‑GGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTcc                                                                                                                          >  6:29388/1‑149 (MQ=255)                         gTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAA‑GGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTcc                                                                                                                          >  6:244757/1‑148 (MQ=255)                         gTCGCAGGCCAGTTGAAGGGTAGGCGAGAGATCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAA‑GGCGGGTAAATCTGAGGGGCGTTATATTATATCAAATGGTTTCGTGCAGCACGGCCCATTCTCGGGCACTCCAGCTcc                                                                                                                          >  6:94057/1‑148 (MQ=255)                           cGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAA‑GGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCcac                                                                                                                       <  5:29388/149‑1 (MQ=255)                              aGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAA‑GGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAgg                                                                                                                    >  2:348367/1‑149 (MQ=255)                                gCCATTTGAAGGGTAGGCTAGAGCTCGGCAGGGGCCGGCATGGGGGACTCCGGGGCAAGGCAA‑GGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTa                                                                                                                  <  7:77481/149‑1 (MQ=255)                                  cAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAA‑GGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACt                                                                                                                >  6:5784/1‑149 (MQ=255)                                     ttGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAA‑GGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGca                                                                                                             >  3:64100/1‑149 (MQ=255)                                        acgggTCGCCGAGCGCGCGGCCGGGGCCGTCTGGGGGGACTCGGGGGCACGGCAC‑GGGGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAg                                                                                                          <  4:126414/147‑1 (MQ=37)                                             tAGGCGATAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAA‑GGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTg                                                                                                     <  1:348367/149‑1 (MQ=255)                                                gCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAA‑GGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACCGGTACTGCACGGCGCTGAAc                                                                                                  >  3:30967/1‑149 (MQ=255)                                                     agCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAA‑GGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCtg                                                                                             <  5:5784/149‑1 (MQ=255)                                                       cTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAA‑GGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCtgtg                                                                                           >  3:147704/1‑149 (MQ=255)                                                        tgggCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAA‑GGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGc                                                                                          <  5:94057/147‑1 (MQ=255)                                                               gggCCGTCATGGGGGACTCCGGGGCAAGGCAA‑GGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCg                                                                                   >  7:38825/1‑149 (MQ=255)                                                                 gCCGTCATGGGGGACTCCGGGGCAAGGCAA‑GGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGt                                                                                 <  4:64100/149‑1 (MQ=255)                                                                    gTCATGGGGGACTCCGGGGCAAGGCAA‑GGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGGGCCAAGCCGGTggg                                                                              >  5:23022/1‑149 (MQ=255)                                                                        tGGGGGACTCCGGGGCAAGGCAA‑GGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTgg                                                                               <  4:256013/144‑1 (MQ=255)                                                                        tGGGGGACTCCGGGGCAAGGCAA‑GGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTgg                                                                               >  3:256013/1‑144 (MQ=255)                                                                           gggACTCCGGGGCAAGGCAA‑GGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGc                                                                       <  5:244757/149‑1 (MQ=255)                                                                                tCCGGGGCAAGGCAA‑GGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCTGGCACGCCCGCTCCCCCAGGTACTGCACAGCTCTGAACGCATTTGCCAAGCCGGTGGGAGCGGGCCTGcc                                                                  >  6:87579/1‑149 (MQ=255)                                                                                tCCGGGGCAAGGCAA‑GGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGcc                                                                  >  7:302356/1‑149 (MQ=255)                                                                                  cGGGGCAAGGCAA‑GGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCcg                                                                >  3:22883/1‑149 (MQ=255)                                                                                  cGGGGCAAGGCAA‑GGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCcg                                                                >  2:316428/1‑149 (MQ=255)                                                                                                  ggggtAATTCTGTGGGGCTTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCAAAGGTACTGCACAGCTCTGAACGCCTGTGCAAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGcaca                                                 <  6:23022/148‑1 (MQ=38)                                                                                                                gggCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCCCAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGca                                                   >  5:205782/1‑133 (MQ=255)                                                                                                                gggCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGc                                    >  7:293637/1‑148 (MQ=255)                                                                                                                gggCGTAATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCcgc                                                               <  7:320099/121‑1 (MQ=255)                                                                                                                 gcggTTTTCTTTTATCAACTGGTTGCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGACCGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCaa                                  <  4:30967/146‑1 (MQ=38)                                                                                                                       aTCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTc                              >  6:270338/1‑147 (MQ=255)                                                                                                                        tCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCaa                            <  5:270338/148‑1 (MQ=255)                                                                                                                            atatCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGcc                         <  4:147704/147‑1 (MQ=255)                                                                                                                                 aaaTGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGAGTGCCCGCGAATGGGCTGCTCAGGTCGGCCCAGGCAACTTCAAGCCTCCTgcg                  >  3:77719/1‑149 (MQ=255)                                                                                                                                      ggttCGGGCCGCACGGCCCAGTCGCGGGCACGCCGGCTCCCACCGGTACTGCACATCTCTGAACGCCGGGGCCAAGCCGCGGGGAGCGGGCGGGCCCGCGAATGGGCTGCACAGGGCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTgg             <  5:87579/147‑1 (MQ=255)                                                                                                                                      gTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTgg             <  7:360770/149‑1 (MQ=255)                                                                                                                                       tttCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTg                                                     >  6:269661/1‑108 (MQ=255)                                                                                                                                       tttCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTg                                                     <  5:269661/108‑1 (MQ=255)                                                                                                                                         tCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCgg                                           >  6:108774/1‑116 (MQ=255)                                                                                                                                         tCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCgg                                           <  5:108774/116‑1 (MQ=255)                                                                                                                                           gggCAGCACGGCCCATTCGCCGGCCCGCCCGCTCCCACAGCTACTGCACACCTCTGAACGCCTCTGCCACCCCGGGGGGAGCGGGCGGGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGc        <  4:77719/149‑1 (MQ=255)                                                                                                                                             gcagcaCGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCGCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCCCAGGTCGGCCCAGGCCACTTCAAGCCTGCTGCGCTTGGGCAGCCt      >  1:147857/1‑149 (MQ=255)                                                                                                                                                 caCGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTc  >  3:158020/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                 GGTGACCGAGGGGCGACGGATCAGGTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAA‑GGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTC  >  NC_002947/1731016‑1731307

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.