| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_002947 | 5,681,415 | +CGGG | intergenic (‑133/+71) | PP_4986 ← / ← PP_4987 | hemolysin III family channel protein/putative Chemotaxis protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5681415 | 3 (0.050) | 23 (0.430) +CGGG |
21/268 | 2.5 | 88.8% | intergenic (‑133/+71) | PP_4986/PP_4987 | hemolysin III family channel protein/putative Chemotaxis protein |
| ? | NC_002947 | 5681416 = | 3 (0.050) | intergenic (‑134/+70) | PP_4986/PP_4987 | hemolysin III family channel protein/putative Chemotaxis protein | |||||
ACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑CC‑GC‑‑‑‑GCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAAT > NC_002947/5681271‑5681534 | aCCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑CC‑GCcggg > 3:186771‑M1/1‑145 (MQ=255) aCATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑CC‑GCcggggct < 1:159002‑M1/144‑8 (MQ=255) aCATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑CC‑GCcggggct > 2:159002‑M1/1‑137 (MQ=255) aTGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑CC‑GCcggggctgctgcgc > 6:308376‑M1/1‑135 (MQ=255) gCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCAATGCATTAA‑‑‑CC‑GCcggggctgatgcgcag > 6:276104‑M1/1‑133 (MQ=255) aaaCACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑CC‑GCcggggctgctgcgcagcc < 4:186771‑M1/149‑19 (MQ=255) cacaGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑CC‑GCcggggctgctgcgcagcccta < 2:96999‑M1/149‑22 (MQ=255) cctcctGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑CC‑GCcggggctgctgcgcagccctatcgcga < 5:308376‑M1/149‑28 (MQ=255) ctGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTGATTTCCACTTCATGAA‑‑‑CC‑GCccgggctgctgcgcagccctatcgccacaa > 5:187373‑M1/1‑118 (MQ=255) aGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTGGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTAATTTGCACTGCCTGAA‑‑‑CC‑GCcggggcgtctgcgccgcccgatagcgccaccacg > 1:248134‑M1/1‑115 (MQ=255) ttgttGATGCCTTGTTTCTTTGTGGTTGGGGCGTGGTGTGGGTAACGGGGCGGTAAGCGGCCCCAGGCTTTCATTCCCACTCATTCAACGCCCGGG‑‑‑‑GCTGCTGCGCAGCCATATCGCCAAAAAAGGCCGCTCCCACTCCAGAccacca < 6:187373/144‑1 (MQ=255) aTGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑CC‑GCcggggctgctgcgcagccctatcgcga < 7:185470‑M1/119‑28 (MQ=255) gCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑CC‑GCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggc > 7:359283‑M1/1‑90 (MQ=255) tGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCTAGGCTTTCATTGCCACTGCATGAA‑‑‑CC‑GCcggggc < 2:333788‑M1/94‑7 (MQ=255) tGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCTAGGCTTTCATTGCCACTGCATGAA‑‑‑CC‑GCcggggc > 1:333788‑M1/1‑88 (MQ=255) ttCTTTGTGGGAGCGGCCTTGGGTCGCGAAAGGGGCGCGACGCGGCCCCAGGCTTTCATTCCCACTCCATCAC‑‑‑CC‑GCCGGGGCTGCTGCGCAGCCCTAGCGCGACACAAGGCCGCTCCCACTcc < 5:364173/124‑1 (MQ=17) ggcgcggCCTTGGGGCGCGAAAGGGGCGCGAACCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑CC‑GCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaacca < 5:276104‑M1/146‑82 (MQ=255) gCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑CC‑GCcg < 3:19969‑M1/64‑3 (MQ=255) gCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑CC‑GCcg > 4:19969‑M1/1‑62 (MQ=255) gcgctAATGGGGCGCTAAGGGGCCCCAGGCTTTAATTCCCACTCATTCAC‑‑‑CC‑GCCGGGGGTGCTGCGAAGCCCTATCGCTAAAAATGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCa < 7:20198/147‑1 (MQ=255) gcgAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑CC‑GCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccacgccctgcgcctcacatcctaaccaaggtcaggttg > 4:277967‑M1/1‑52 (MQ=255) gggCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑CC‑GCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccatgccctgcgcctcacatcctaaccaaggtcaggttgcagat > 1:23382‑M1/1‑45 (MQ=255) gggCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑CC‑GCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagat < 2:23382‑M1/142‑98 (MQ=255) gcgAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑CC‑GCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtca < 5:71910‑M1/146‑106 (MQ=255) gcgAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑CC‑GCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtaa > 6:71910‑M1/1‑41 (MQ=255) cATGAA‑‑‑CC‑GCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtcacgcaccagcctttccaat < 6:113713‑M1/133‑124 (MQ=255) cATGAA‑‑‑CC‑GCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtcacgcaccagcctttccaat > 5:113713‑M1/1‑10 (MQ=255) cATGAA‑‑‑CC‑GCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtcacgcaccagcctttccaat > 7:336793‑M1/1‑10 (MQ=255) aa‑‑‑CC‑GCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtca < 7:362897‑M1/93‑88 (MQ=255) | ACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑CC‑GC‑‑‑‑GCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAAT > NC_002947/5681271‑5681534 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |