| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_002947 | 4,980,585 | +GGC | intergenic (‑24/+44) | PP_4387 ← / ← flgE | hypothetical protein/flagellar hook protein FlgE |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4980585 | 0 (0.000) | 42 (0.770) +GGC |
37/270 | 0.7 | 100% | intergenic (‑24/+44) | PP_4387/flgE | hypothetical protein/flagellar hook protein FlgE |
| ? | NC_002947 | 4980586 = | 0 (0.000) | intergenic (‑25/+43) | PP_4387/flgE | hypothetical protein/flagellar hook protein FlgE | |||||
CACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCGCCG > NC_002947/4980446‑4980734 | aggtagcggccggtgaccaggctttgccattgatagaacggggcgggggcagcgggggcaggcagaaccagcaccagcaaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCg < 6:344734‑M2/9‑1 (MQ=255) gtagcggccggtgaccaggctttgccattgatagaacggggcgggggcagcgggggcaggcagaaccagcaccagcaaggggaacaatgccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCg < 6:350031‑M2/9‑1 (MQ=255) gtagcggccggtgaccaggctttgccattgatagaacggggcgggggcagcgggggcaggcagaaccagcaccagcaaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGc < 5:265259‑M2/11‑1 (MQ=255) gtgaccaggctttgccattgatagaacgcggcgggggcagcgggggcaggcagaaccaacaccagaaaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttaacatacttgcgccAGCTTTGCGGCCCCAATTAc > 3:285831‑M2/129‑148 (MQ=255) ccaggctttgccattgatagaacggggcgggggaagcgggggcaggcagaaccagcaccagcaaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAac < 7:144962‑M2/24‑1 (MQ=255) caggctttgccattgatagaacggggcgggggcagcgggggcaggcagaacctgcaccagcaaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAacac < 2:240293‑M2/26‑1 (MQ=255) caggctttgccattgatagaacggggcgggggcagcgggggcaggcagaaccagcaccagcaaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAacac > 2:317934‑M2/124‑149 (MQ=255) tttgccattgatagaacggggcgggggcagcgggggcaggcagaaccagcaccagcaaggggaacaaggccagtaacgacacccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAg > 5:73287‑M2/119‑149 (MQ=255) attgatagaacggggcgggggcagcgggggcaggcagaaccagcaccagcaaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAAt > 2:247210‑M2/113‑148 (MQ=255) ttgatagaacggggcggcggcagcgggggcacgcagaaccagcaccagcaaggggaacaaggccagtaacgacagccgcttcattcgcgagaaccttcacattcttggggcCGATTAGCGGCCCCAATTACAAACACCAAACccaaaa > 5:93972‑M2/112‑146 (MQ=255) atagaacggggcgggggcagcgggggcaggcagaaccagcaccagcaaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACaa > 3:63362‑M2/109‑148 (MQ=255) tagaacggggcgggggcagcgggggcaggcagaaccagcaccagcaaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATa > 1:306050‑M2/108‑144 (MQ=255) tagaacggggcgggggcagcgggggcaggcagaaccagcaccagcaaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATa < 2:306050‑M2/37‑1 (MQ=255) aacggggcgggggcagcgggggcaggcagaaccagcaccagcaaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCaaa > 4:59686‑M2/105‑134 (MQ=255) ggcgggggcagcgggggcaggcagaaccagcaccagcaaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTc < 6:188386‑M2/50‑1 (MQ=255) ggcagcgggggcaggcagaaccagcaccagcaaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑g > 6:367225‑M2/94‑148 (MQ=255) gcagcgggggcaggcagaaccagcaccagcaaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑Gaa > 5:124353‑M2/93‑149 (MQ=255) agaaccagcaccagcaaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCatga > 4:358678‑M2/78‑149 (MQ=255) aaccagcaccagcaaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCatgatg > 6:251120‑M2/76‑149 (MQ=255) cagcaaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCGTTGGGGCCCCAAATAAAAACACCAAAACCAAAACAATCAACAGGTGATCT‑GAATGATTGTGTGCATGGTGGTGcttta > 2:187913‑M2/67‑147 (MQ=255) caaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTg < 5:251120‑M2/86‑1 (MQ=255) caaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTg < 1:247210‑M2/86‑1 (MQ=255) ggggaacaaggccagtaacgtcagccgcttcattcgcgtgaaccttcagattcttggggcCGCTTTGAGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATTATGGTCTGCATGATGGTGCTTTCAGTGGaa < 6:93972‑M2/89‑1 (MQ=255) gaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATg > 2:111106‑M2/58‑149 (MQ=255) caaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTc < 4:63362‑M2/95‑1 (MQ=255) aaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTAGTATTATGGTCTGCAATATTGTGGTTTAAGTGGAAATTgta > 1:310710‑M2/54‑148 (MQ=255) aggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAACCACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTg < 7:250604‑M2/86‑1 (MQ=255) aggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCtt < 1:317934‑M2/97‑1 (MQ=255) ggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTg < 5:367225‑M2/98‑1 (MQ=255) taacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTg > 1:154888‑M2/46‑149 (MQ=255) cgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGcc < 6:73287‑M2/107‑1 (MQ=255) cagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTgg < 1:187913‑M2/110‑1 (MQ=255) gcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGtt > 7:89703‑M2/35‑149 (MQ=255) gcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGtt < 6:124353‑M2/115‑1 (MQ=255) ttcgcgtgaaccttcacattcttggggcCGGGTTGCGGCCCCAATTACATACCCCAAAGCCAATACAATCATCAGCTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTg > 5:19923‑M2/29‑149 (MQ=255) cgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTgc < 1:328167‑M2/122‑1 (MQ=255) gtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCt < 3:358678‑M2/126‑1 (MQ=255) ctgaaccttcacattcttggggcCGGATTGCGGCCCGAATTACAAACACCAAAGCCAATACATGCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGTAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCt < 4:285831‑M2/126‑1 (MQ=255) cttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGAt > 5:170535‑M2/18‑147 (MQ=255) ttgtaattggggcCGCAAAGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGtt > 1:161639‑M2/14‑149 (MQ=255) acattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGtt < 7:121127‑M2/136‑1 (MQ=255) cattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTATGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGtt > 2:46311‑M2/13‑148 (MQ=255) cgcTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCGCCg < 5:88859/149‑1 (MQ=255) | CACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCGCCG > NC_002947/4980446‑4980734 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |