| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 196,327 | 0 | A | C | 27.8% | 153.9 / 79.0 | 98 | T611T (ACA→ACC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base A (34/36); new base C (12/15); total (46/52) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.22e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.69e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGA > NC_002947/196181‑196473 | aCCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACa < 3:267344/147‑1 (MQ=38) cccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGt < 5:152711/147‑1 (MQ=39) cccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGt > 6:152711/1‑147 (MQ=39) cccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGa > 2:306982/1‑149 (MQ=39) cccGAACCCGACCCCGGCTCAGACCAGGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCG‑GTCCCCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGa > 1:199941/1‑149 (MQ=255) ccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAc > 5:126669/1‑149 (MQ=39) cGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAcc < 5:187074/149‑1 (MQ=39) aaCCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCt < 4:303294/149‑1 (MQ=39) cccGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGt > 1:321715/1‑149 (MQ=39) cccGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGt < 5:126016/149‑1 (MQ=39) ccGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTc > 1:291902/1‑149 (MQ=39) ccGACGCCGGCTCAGACCACGATCAACGACTCCGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCGCTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGt < 1:77418/149‑1 (MQ=255) cGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTcc < 7:301933/149‑1 (MQ=39) cgtctctGACCACGATCAACGACTCGCTCGACACCACTACAGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCTGTGACAGTGACCCTGTCCAACg < 6:245348/144‑1 (MQ=14) cGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCCTGATCACTTACACCG‑TGACCCAGAGCAAACCTGCCCACACGCCGGTGACAGTGACCCTGTCCAACg > 5:245348/1‑147 (MQ=255) aCCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGTGAGCCCGTCGAGTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATACTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCa > 1:290017/1‑149 (MQ=255) cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTa < 2:321715/149‑1 (MQ=39) tCAACGACTAGGTCGAAACCACTACCGCGTCCCTGAAGTCTTGACCGTAG‑GTTACCGAAGGGTGCGTGATCACTTACTCCG‑TGACCCTTAGCAATACTGCCCAGACGCCGGTGAAAGTGACCCTGTCCAACGGCCAAACCATTACCGtt < 6:279273/149‑1 (MQ=11) aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGaa > 4:268528/1‑149 (MQ=39) cGACTCGGTCTACACCACTACCGCGACCCTGACGGCGAGTCAGTCG‑GTCACCGAAGGCGTCGTGATCACTTACACCG‑TGAACCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGCCCCTGTCCAACGGCCAACCAATTACACTTGAAg > 6:289923/1‑149 (MQ=14) gACTCGGTCGACACCACTACCGCGACCCTGACGGTGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGc < 2:290017/149‑1 (MQ=255) ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGc < 2:199941/148‑1 (MQ=39) ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGc > 5:162069/1‑148 (MQ=39) tCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCaaa < 2:291902/149‑1 (MQ=40) caccacTACCGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAAACCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg > 4:307073/1‑141 (MQ=25) caccacTACCGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAAACCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg < 3:307073/141‑1 (MQ=25) cacTACCGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAcc > 2:347926/1‑127 (MQ=35) cacTACCGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAcc < 1:347926/127‑1 (MQ=35) cacTACCGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAgg > 3:252519/1‑149 (MQ=17) accaCCGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAggg > 5:68993/4‑149 (MQ=0) accaCCGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAggg < 6:215832/146‑1 (MQ=0) acTACCGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAggg > 5:152203/1‑149 (MQ=37) aCCGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAg > 6:84467/1‑149 (MQ=34) aCCGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGTCAAACGATTACCGTTGAAGCCGGCAAAACCCAg < 5:375364/144‑1 (MQ=255) aCCGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGTCAAACGATTACCGTTGAAGCCGGCAAAACCCAg > 6:375364/1‑144 (MQ=255) ccGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGc > 6:63617/1‑110 (MQ=32) ccGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGc < 5:63617/110‑1 (MQ=32) ccGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGc > 4:339074/1‑149 (MQ=34) cgcgACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATAACCGTTGAAGCCGGCAAAACCCAGGGCAGCg > 5:12472/1‑149 (MQ=255) gcgACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGt > 3:320606/1‑149 (MQ=12) aCCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGa < 7:261904/149‑1 (MQ=34) cccTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAt > 1:194139/1‑149 (MQ=34) cccTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATAACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGac < 6:12472/149‑2 (MQ=255) ccTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGact < 2:239136/149‑3 (MQ=12) cagACGGCGAGCCTGTCG‑GTCACCGAAGGCGGCGTGATAACTTACACCG‑TGACCCTGAGCAACCCTGCCCAGACGCCGGTGACAGTGACACTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGact > 4:135605/3‑146 (MQ=11) tGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTc > 3:179056/1‑149 (MQ=34) aCGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGaa < 4:219860/117‑1 (MQ=32) aCGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGaa > 3:219860/1‑117 (MQ=32) aCGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTc < 5:67641/147‑1 (MQ=255) aCGGAGATCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGTCTCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa < 7:175377/149‑1 (MQ=255) ggCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGa < 4:148039/149‑1 (MQ=34) gCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCa < 2:129828/146‑1 (MQ=255) gCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCa > 1:129828/1‑146 (MQ=255) cGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGc > 4:135270/1‑148 (MQ=255) gTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGt < 4:140079/129‑1 (MQ=35) g‑gTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAt < 6:162069/148‑1 (MQ=34) tCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGAc > 7:104211/1‑149 (MQ=255) aCCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACGGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGt < 2:99575/149‑1 (MQ=21) aCCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCTAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACg < 3:339074/148‑1 (MQ=21) aCCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGt > 3:194967/1‑149 (MQ=34) cGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTc > 5:135914/1‑148 (MQ=255) gAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATg < 4:50887/142‑1 (MQ=34) gAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATg > 3:50887/1‑142 (MQ=34) gAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTa > 6:105113/1‑149 (MQ=255) aaGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTac < 4:297192/149‑1 (MQ=255) gcgTGATCACTTACACCG‑TGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACaacaac < 6:68993/149‑1 (MQ=255) cgTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTac < 5:175449/142‑1 (MQ=34) cgTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTac > 6:175449/1‑142 (MQ=34) cgTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACg < 5:84467/149‑1 (MQ=34) cgTGATCACTTACACCG‑TGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACg < 4:320606/149‑1 (MQ=255) aTCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGa > 3:369016/1‑131 (MQ=34) aTCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGa < 4:369016/131‑1 (MQ=34) aCTTACACCG‑TGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAggg < 6:288716/98‑1 (MQ=11) acacCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt < 6:126669/148‑1 (MQ=34) acacCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt < 4:194967/148‑1 (MQ=34) cacCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt > 4:128702/1‑147 (MQ=34) cacCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCa < 2:194139/149‑1 (MQ=34) cacCG‑TGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCa < 2:160407/149‑1 (MQ=255) acCG‑TGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAg > 5:189391/1‑149 (MQ=255) tcG‑TGACCCTGAGCAACCCTGACCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGATGAAGCCTGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgc < 6:359092/148‑2 (MQ=11) cG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa < 3:63537/105‑1 (MQ=32) cG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa > 4:63537/1‑105 (MQ=32) cG‑TGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCa > 1:118225/1‑105 (MQ=11) cG‑TGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCa < 2:118225/105‑1 (MQ=11) tGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACTGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACaacaac < 7:249400/131‑1 (MQ=17) tGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTc < 7:177943/149‑1 (MQ=37) aCCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCAc > 1:100945/1‑149 (MQ=37) aCCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCAc < 5:105113/149‑1 (MQ=11) ccTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa > 4:370601/1‑99 (MQ=33) ccTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa < 3:370601/99‑1 (MQ=33) tCCTGCCCAGACGCCGGTGACAGTGACACTGTCCAACGGCCAAACCATTAACGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACg > 3:168770/1‑149 (MQ=255) ccTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGc > 7:70369/1‑149 (MQ=37) cTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGc < 4:179056/148‑1 (MQ=37) tGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCa > 7:13567/1‑149 (MQ=37) cccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCAcc < 6:152203/149‑1 (MQ=38) aCGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTac > 5:43045/1‑102 (MQ=255) aCGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTac < 6:43045/102‑1 (MQ=255) gCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGt > 2:94579/1‑148 (MQ=39) cAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGa < 7:155258/148‑1 (MQ=38) | ACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCG‑GTCACCGAAGGCGGCGTGATCACTTACACCG‑TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGA > NC_002947/196181‑196473 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |