| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 1,070,248 | +GA | intergenic (+48/+94) | aroP‑I → / ← PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,070,246 | 1 | . | G | 88.9% | 218.0 / 21.3 | 74 | intergenic (+46/+96) | aroP‑I/PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| Reads supporting (aligned to +/- strand): ref base . (4/4); new base G (32/32); total (38/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| * | NC_002947 | 1,070,246 | 2 | . | A | 88.9% | 206.9 / 21.3 | 74 | intergenic (+46/+96) | aroP‑I/PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| Reads supporting (aligned to +/- strand): ref base . (4/4); new base A (33/31); total (38/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GT‑‑GATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAA > NC_002947/1070099‑1070383 || cTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑t‑‑gt‑‑g > 4:292997/1‑149 (MQ=255) gACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑t‑‑gt > 2:122217/1‑146 (MQ=255) gccgATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GT‑‑Gagatcgag > 3:411123/1‑142 (MQ=255) gCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCcgcgc < 2:236996/149‑1 (MQ=255) gCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCcgcgc > 2:118333/1‑149 (MQ=255) tctcGGTAATGCTGATCCCGGCATGGAACCCTGTGCTGTGGTTGGCTTTCAATCTGAAGAAGGCTCGCCAGGCCAAGCA‑CTCATCGCGTTTCTTCGTAAGGCGTATGCCGATATGATTTAGGCCCC‑‑T‑‑GTCAGATCGAGCGAGGCgcggg > 4:333334/1‑149 (MQ=255) tcGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GT‑‑Ga < 5:87615/129‑1 (MQ=255) tcGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GT‑‑Ga > 6:87615/1‑129 (MQ=255) tAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGgcgc > 7:97184/1‑149 (MQ=255) aaggtGATCCCGGCAGCGATCGCTGGGCTGTGGGGGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTc < 6:436171/145‑1 (MQ=38) tGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCg < 8:46301/149‑1 (MQ=255) gCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCAGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGa > 1:310335/1‑149 (MQ=255) cTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGa < 1:122217/148‑1 (MQ=255) atgccGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGTTGGCTCGCCTGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCCCGCGCGGCGGTCGAtct < 4:128437/145‑1 (MQ=37) cATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGc > 7:104365/1‑148 (MQ=255) tGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGAt < 1:118333/149‑1 (MQ=255) ctgtgctgtgGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGGGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGc < 7:24611/139‑1 (MQ=38) ctgtgctgtgGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGGGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGc > 8:24611/1‑139 (MQ=38) ctgtgctgtgGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGcc > 6:427299/1‑149 (MQ=255) gctgtgGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTa > 7:40981/1‑147 (MQ=255) ctgtgGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCTAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTaaa < 6:373600/148‑1 (MQ=255) ctgtgGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAg > 6:224070/1‑149 (MQ=255) gtgggtggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGGGA‑‑GATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGc < 1:393682/149‑1 (MQ=255) gggtggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCAt > 2:303613/1‑149 (MQ=255) gggtggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCAt > 2:309736/1‑149 (MQ=255) ggtggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCAt < 1:421809/148‑1 (MQ=255) gtggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGc < 3:292997/149‑1 (MQ=255) tggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCg > 5:345361/1‑149 (MQ=255) tggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCg > 5:109873/1‑149 (MQ=255) cTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCAGT‑‑GA‑‑GATAGAGCGCCGCGCGGGCAGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGTCCTGCGt > 6:253388/1‑147 (MQ=255) cTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCt < 8:97184/149‑1 (MQ=255) tttCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTTAGATAGAGCGCAGCGAGTGCGGCGCTCGATCTCACAGGAGATGAAAGCCTAAAGGCATGCGTCTg > 6:163940/1‑149 (MQ=255) tttCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGa > 8:1910/1‑113 (MQ=255) tttCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGa < 7:1910/113‑1 (MQ=255) tttCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GT‑‑Gagat < 3:139607/88‑4 (MQ=255) tttCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GT‑‑Gagat > 4:139607/1‑85 (MQ=255) cAAGCTGAAGAAGGCTCGCCAGGCCAAGGGTCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCA‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGa > 1:262836/1‑123 (MQ=37) cAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGa < 2:262836/122‑1 (MQ=255) gCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTggcggc < 8:104365/148‑1 (MQ=255) gCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGcc > 3:111570/1‑149 (MQ=255) gaagacGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCt > 4:431193/1‑148 (MQ=255) agaagGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGAc < 8:40981/149‑1 (MQ=255) gaagGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGAcg > 4:373468/1‑149 (MQ=255) ggCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCTGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGt > 6:112142/1‑149 (MQ=255) cTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGCTTTCATCGCC‑‑T‑‑GTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCCGAAAACCTaacg < 8:33832/121‑3 (MQ=14) cTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGCTTTCATCGCC‑‑T‑‑GTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCCGAAAACCTaacg > 7:33832/1‑119 (MQ=14) tCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTcc > 8:77011/1‑149 (MQ=255) tCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTcc > 6:39221/1‑149 (MQ=255) gCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATTTCACAGGCGATGAAAg < 7:29101/111‑1 (MQ=37) gCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATTTCACAGGCGATGAAAg > 8:29101/1‑111 (MQ=37) gCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTcc < 5:224070/147‑1 (MQ=255) gCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTcc < 7:150730/147‑1 (MQ=255) ccAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCt > 6:329146/1‑149 (MQ=255) cAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCtt < 1:303613/149‑1 (MQ=255) cAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCtt < 1:309736/149‑1 (MQ=255) cAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATg > 5:124504/1‑149 (MQ=255) aaGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGc < 3:431193/149‑1 (MQ=255) ggg‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGccc < 4:111570/149‑1 (MQ=255) gg‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGGGA‑‑GATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGcccc < 5:253388/149‑1 (MQ=255) tGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTc > 1:184362/1‑148 (MQ=255) aTCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAAt < 6:345361/149‑1 (MQ=255) tttGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGcc > 7:408638/1‑149 (MQ=255) gTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTc < 6:109873/148‑1 (MQ=255) gTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGcc > 3:334333/1‑148 (MQ=255) gggTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAgca < 4:81546/148‑1 (MQ=255) ggTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAgcacg < 2:310335/149‑1 (MQ=255) gTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTcc > 1:340661/1‑117 (MQ=255) gTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTcc < 2:340661/117‑1 (MQ=255) aGGTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAgtggtg < 6:124504/148‑1 (MQ=255) gTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAg > 1:279244/1‑132 (MQ=255) gTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAg < 2:279244/132‑1 (MQ=255) gTTTTCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATATCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTa > 6:256218/1‑148 (MQ=255) gTTTTCGGCGCC‑‑T‑‑GTGAGATAGAGCGCCGCGCGGGCGGCGCTCGATATCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTTACGCGTTACCCATACATTCCCCTCAATTCTGCCTCCGCCAAGCACGCACAGTGGTGTa > 2:228900/1‑148 (MQ=37) ttttCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACa < 4:334333/149‑1 (MQ=255) ttCGGCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAg < 3:373468/148‑1 (MQ=255) ggCGCC‑‑T‑‑GTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGGTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCaa > 1:377427/1‑148 (MQ=255) || CTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGG‑CTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GT‑‑GATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAA > NC_002947/1070099‑1070383 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |