Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_002947	1,419,549	+C	intergenic (‑38/+98)	PP_1242 ← / ← PP_1244	hypothetical protein/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	1,419,548	1	.	C	100.0%	144.8 / NA	43	intergenic (‑37/+99)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base C (17/26);  total (17/26)

CCTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑CTCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGA  >  NC_002947/1419400‑1419682                                                                                                                                                      |                                                                                                                                        ccTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGggctgg                                                                                                                                          >  3:54594/1‑149 (MQ=255)  cTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGggctgg‑c                                                                                                                                        >  3:318245/1‑149 (MQ=255)  cTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGGTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGggctgg‑c                                                                                                                                        <  5:49584/149‑1 (MQ=255)     gCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGggctgg‑cctc                                                                                                                                     >  6:295853/1‑146 (MQ=255)      cAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGggctgg‑cctct                                                                                                                                    <  8:110985/149‑5 (MQ=255)        ggggATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTc                                                                                                                                   >  1:178929/1‑149 (MQ=255)            aTGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCgg                                                                                                                              <  2:178929/149‑1 (MQ=255)              gCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGGTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCggg                                                                                                                             <  6:127947/148‑1 (MQ=255)                      cGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCg                                                                                                                     <  3:184630/148‑1 (MQ=255)                         tGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTcc                                                                                                                 >  1:30063/1‑149 (MQ=255)                           cGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCca                                                                                                               <  6:178913/149‑1 (MQ=255)                              aaCAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTGTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCCACAg                                                                                                            <  5:28267/149‑1 (MQ=255)                               aCAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGACGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTCGTCATTGTTTTGTGTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCCACAgg                                                                                                           <  5:295853/149‑1 (MQ=39)                                 aGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCCACAGGTa                                                                                                         >  5:330567/1‑149 (MQ=255)                                 aGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCCACAGGTa                                                                                                         <  4:54594/149‑1 (MQ=255)                                     ggTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCCACAGGTACtgt                                                                                                     >  3:108415/1‑149 (MQ=255)                                      gTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCCACAGGTACtgtg                                                                                                    <  2:30063/149‑1 (MQ=255)                                          gtgtTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGt                                                                                                <  1:359804/149‑1 (MQ=255)                                           tgttgtTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTg                                                                                               >  3:347149/1‑149 (MQ=255)                                               gtattCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGATTCCTGGGCTGGCCTCTTC‑GCTGGCACGCCCGCTCCCACAGGTACTGTGCAGAGCGt                                                                                            >  5:184589/4‑148 (MQ=39)                                                ttttCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGGATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGa                                                                                          >  6:90725/1‑149 (MQ=255)                                                 tttCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGa                                                                                          <  3:7824/148‑1 (MQ=255)                                                    cGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACgg                                                                                       <  4:318245/148‑1 (MQ=255)                                                        ttGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCtgtg                                                                                  >  6:29231/1‑149 (MQ=255)                                                          ggTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCtgtg                                                                                  <  4:108415/147‑1 (MQ=255)                                                           gTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTgtggt                                                                                >  1:272787/1‑148 (MQ=255)                                                           gTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGACATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCgg                                                                                                                              >  3:318112/1‑102 (MQ=255)                                                           gTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGACATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCgg                                                                                                                              <  4:318112/102‑1 (MQ=255)                                                            tAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGa                                                                              <  4:347149/149‑1 (MQ=255)                                                              gAAGCAGGGCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCTGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGa                                                                              <  1:101552/148‑1 (MQ=255)                                                                 gCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCtg                                                                         >  5:210011/1‑149 (MQ=255)                                                                  cAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCtgt                                                                        <  6:330567/149‑1 (MQ=255)                                                                       cTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAg                                                                   >  2:166383/1‑149 (MQ=255)                                                                           ccGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCggg                                                               <  1:50567/149‑1 (MQ=255)                                                                           ccGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCgg                                                                <  5:29231/148‑1 (MQ=255)                                                                           ccGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCgg                                                                <  1:166383/148‑1 (MQ=255)                                                                            cGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGc                                                              <  2:272787/149‑1 (MQ=255)                                                                               cTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTg                                                           <  8:318499/149‑1 (MQ=255)                                                                                    gtggGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCt                                                                          >  1:110504/1‑129 (MQ=255)                                                                                    gtggGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCt                                                                          <  2:110504/129‑1 (MQ=255)                                                                                         tgcTGTTGGGTGGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAaga                                                 <  6:210011/147‑1 (MQ=255)                                                                                                        ggTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCtgt                                                                        >  4:378059/1‑111 (MQ=255)                                                                                                        ggTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCtgt                                                                        <  3:378059/111‑1 (MQ=255)                                                                                                              cATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAg                            >  6:72300/1‑149 (MQ=255)                                                                                                                 tgttttgtttCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGGCCCCCCCCGACCCCAGGGTATGTGGAGGGGGTGAAGGCGGTGGGGACCCGGGGGGAGCGGGGGTGGCCCCCGAGAGGCCGGAGCGGCGAATggcaagtg                         >  4:167720/1‑142 (MQ=255)                                                                                                                   ttttgtttCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGc                                                                  >  2:54777/1‑106 (MQ=255)                                                                                                                   ttttgtttCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGc                                                                  <  1:54777/106‑1 (MQ=255)                                                                                                                                        gTTGCCTGGTTTGGCCTCTTC‑GGGGTCACGCCCGCTCCCTCTTGTTTTGTGCAGTGCGTGACGGCTGTGGTTACCTTGTGGGTGGGGGCGTGCCCGCGTAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGa  <  6:184589/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                        CCTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑CTCTTC‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGA  >  NC_002947/1419400‑1419682

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑