New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2301453 =	0 (0.000)	90 (1.310)	51/274	0.4	100%	intergenic (‑97/‑234)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	2925429 =	NA (NA)					intergenic (‑177/+388)	PP_2563/PP_2564	antibiotic biosynthesis protein/quercetin 2,3‑dioxygenase

GCTGGTAGCACAACGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATGGTTCCCA  >  NC_002947/2925286‑2925571                                                                                                                                                 |                                                                                                                                               gctggTAGCACAACGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCAcc                                                                                                                                           >  6:209061/1‑149 (MQ=255)  ctggTAGCACAACGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCAccc                                                                                                                                          >  5:59661/1‑149 (MQ=255)   tggTAGCACAACGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCAcc                                                                                                                                           >  7:131289/1‑147 (MQ=255)   tggTAGCACAACGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCa                                                                                                                                         <  5:209061/149‑1 (MQ=255)     gccgCACACCGCCAGCGCCGCCGGCCTGCTGCCGCCAATCGTTGCCGGCGGCCTTGCGAGAGCCGGGCAGGGCCAGGGCCGCGAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGc                                                                                                                                       <  4:302919/146‑1 (MQ=255)            aaCGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCg                                                                                                                                >  1:278883/1‑149 (MQ=255)             aCGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCg                                                                                                                                >  4:188411/1‑149 (MQ=255)                                    gcgcCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAAc                                                                                                         <  4:9102/148‑1 (MQ=255)                                      gcCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAgg                                                                                                      <  2:1248/149‑1 (MQ=255)                                      gcCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAg                                                                                                       >  1:1248/1‑148 (MQ=255)                                             tttGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCa                                                                                               >  6:320543/1‑149 (MQ=255)                                                gAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGa                                                                                            >  5:277125/1‑149 (MQ=255)                                                     cTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCa                                                                                       <  8:131289/149‑1 (MQ=255)                                                        ccTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTc                                                                                                                    <  3:143845/117‑1 (MQ=255)                                                        ccTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTc                                                                                                                    >  4:143845/1‑117 (MQ=255)                                                        ccTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCAACCAGCCCTTCCTGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGa                                                                                     >  3:13089/1‑148 (MQ=255)                                                         cTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATc                                                                                   >  1:196296/1‑149 (MQ=255)                                                              gATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCAc                                                                              <  2:278883/149‑1 (MQ=255)                                                                tAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTg                                                                            <  5:320543/149‑1 (MQ=255)                                                                  gCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTg                                                                            <  3:188411/148‑1 (MQ=255)                                                                  gCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGAc                                                                          <  6:59661/149‑1 (MQ=255)                                                                   ccGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACa                                                                         >  8:264223/1‑149 (MQ=255)                                                                    cGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACa                                                                                                        <  8:368022/117‑1 (MQ=255)                                                                      ggCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCg                                                                      <  2:348332/149‑1 (MQ=255)                                                                        cAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCgag                                                                    <  7:202013/149‑1 (MQ=255)                                                                          ggTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGAt                                                                  <  2:257969/149‑1 (MQ=255)                                                                           gTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATc                                                                 >  3:33785/1‑149 (MQ=255)                                                                             ccAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTa                                                               >  6:239055/1‑149 (MQ=255)                                                                              cAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTa                                                               <  1:279104/148‑1 (MQ=255)                                                                               aGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAg                                                              >  8:195057/1‑148 (MQ=255)                                                                                 ggCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACGGGATGCGCATGACGTCAGATCTg                                                                                 <  7:43596/127‑1 (MQ=255)                                                                                 ggCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACGGGATGCGCATGACGTCAGATCTg                                                                                 >  8:43596/1‑127 (MQ=255)                                                                                                cccATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCAtt                                                     >  1:239110/1‑140 (MQ=255)                                                                                                cccATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCAtt                                                     <  2:239110/140‑1 (MQ=255)                                                                                                 ccATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGaaa                                                           <  5:339793/133‑1 (MQ=255)                                                                                                 ccATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGaaa                                                           >  6:339793/1‑133 (MQ=255)                                                                                                 ccATAAAACCCTGCTAACCCGACGGG‑TTAGCAGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGa                                           >  1:251269/1‑149 (MQ=255)                                                                                                  cATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGAt                                          >  7:227764/1‑149 (MQ=255)                                                                                                      aaaCCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCgg                                      <  6:277125/149‑1 (MQ=255)                                                                                                         aaccgCTAACCCGTCGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGAt                                                                                    >  8:237987/5‑100 (MQ=255)                                                                                                         aaccgCTAACCCGTCGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGAt                                                                                    <  7:237987/96‑1 (MQ=255)                                                                                                         aaccgCTAACCCGTCGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCggg                                     >  1:169756/5‑147 (MQ=255)                                                                                                          accgCTAACCCGTCGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAg                                  >  5:267021/4‑149 (MQ=255)                                                                                                                 aCCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGAc                                              <  1:128379/130‑1 (MQ=255)                                                                                                                 aCCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGAc                                              >  2:128379/1‑130 (MQ=255)                                                                                                                  cccGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATACGGGTAGGTCAgccg                          >  2:409672/1‑149 (MQ=255)                                                                                                                     gACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCg                                                                      >  4:242485/1‑102 (MQ=255)                                                                                                                     gACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCg                                                                      <  3:242485/102‑1 (MQ=255)                                                                                                                          g‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATAc                  >  6:262604/1‑149 (MQ=255)                                                                                                                              aGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACtt                <  4:33785/148‑1 (MQ=40)                                                                                                                                  gttgttCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTa           >  8:11524/1‑149 (MQ=38)                                                                                                                                        ccATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATGGtt      <  5:239055/148‑1 (MQ=33)                                                                                                                                         cATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATGGTTcc    <  8:227764/149‑1 (MQ=32)                                                                                                                                           tGGGAGATCACCCAGCCCTTCCTGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCACCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATGGTTCCCa  <  4:13089/149‑1 (MQ=14)                                                                                                                                           tGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACttt               >  7:266019/1‑136 (MQ=31)                                                                                                                                           tGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACttt               <  8:266019/136‑1 (MQ=31)                                                                                                                                           tGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATGGTTccc   >  3:255252/1‑148 (MQ=31)                                                                                                                                                 |                                                                                                                                               GCTGGTAGCACAACGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGG‑TTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATGGTTCCCA  >  NC_002947/2925286‑2925571

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.