| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,447,848 | Δ1 bp | 7.4% | intergenic (‑284/‑38) | nicC ← / → nicX | 6‑hydroxynicotinate 3‑monooxygenase/2,5‑dihydroxypyridine 5,6‑dioxygenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,447,848 | 0 | A | . | 7.4% | 253.5 / 14.2 | 81 | intergenic (‑284/‑38) | nicC/nicX | 6‑hydroxynicotinate 3‑monooxygenase/2,5‑dihydroxypyridine 5,6‑dioxygenase |
| Reads supporting (aligned to +/- strand): ref base A (36/39); new base . (4/2); total (40/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.32e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.52e-01 | |||||||||||
GATTGTTACCGTAAATACTGGTCAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTGGCCGTGCTCAAGAGCCACTACTCCGAC > NC_002947/4447703‑4447993 | gATTGTTACCGTAAATACTGGTCAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATg < 1:100999/148‑1 (MQ=255)gATTGTTACCGTAAATACTGGTCAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATg < 4:84932/148‑1 (MQ=255) aTTGTTACCGTAAATACTGGTCAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATgg < 2:307330/148‑1 (MQ=255) gTTACCGTAAATACTGGTCAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTgcg > 7:334627/1‑149 (MQ=255) ttACCGTAAATACTGGTCAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTgcgc > 2:254393/1‑149 (MQ=255) ccGTAAATACTGGTCAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCGCTGCCATGGTGCGcccc > 1:384151/1‑149 (MQ=255) ccGTAAATACTGGTCAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGcccc > 4:2655/1‑149 (MQ=255) cGTAAATACTGGTCAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCt < 4:9502/149‑1 (MQ=255) cGTAAATACTGGTCAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCt < 4:97578/149‑1 (MQ=255) cGTAAATACTGGTCAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCt > 6:158110/1‑149 (MQ=255) gTAAATACTGGTCAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCAACGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTg > 7:376730/1‑149 (MQ=255) aaTACTGGTCAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTc < 1:254393/148‑1 (MQ=255) aCTGGTCAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACg > 2:74447/1‑149 (MQ=255) tCAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCAcc > 6:74826/1‑149 (MQ=255) aaTGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCGCTGCCATGGTGCGCCCCTGTCAACCCCAcc‑c < 2:384151/148‑1 (MQ=255) aaTGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCAcc > 3:41871/1‑147 (MQ=255) aTGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAg < 1:74447/149‑1 (MQ=255) ggATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAAc > 6:298420/1‑149 (MQ=255) tAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATg > 8:246475/1‑149 (MQ=255) aaCGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGc > 2:381516/1‑149 (MQ=255) aaCGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGc > 8:240375/1‑149 (MQ=255) cGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCg < 5:227251/149‑1 (MQ=255) gTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGga < 5:247841/134‑1 (MQ=255) gTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGga > 6:247841/1‑134 (MQ=255) gTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCgg > 3:322158/1‑149 (MQ=255) aGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAAt < 5:298420/149‑1 (MQ=255) gATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGa < 5:326280/134‑1 (MQ=255) gATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGa > 6:326280/1‑134 (MQ=255) cTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACaa < 3:2655/149‑1 (MQ=255) cTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACaa < 8:337063/149‑1 (MQ=255) cTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACaa < 7:375171/149‑1 (MQ=255) ttGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAg > 5:121753/1‑138 (MQ=255) ttGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAg < 6:121753/138‑1 (MQ=255) ttGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAAc > 5:321477/1‑149 (MQ=255) gctcgctGGCAGGATGCGTTTTCATCTGCACAAGTAGTGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGAc < 8:334627/149‑1 (MQ=255) gCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGAt < 1:358102/147‑1 (MQ=255) gCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGt > 4:306025/1‑149 (MQ=255) cAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGtt > 3:167992/1‑149 (MQ=255) gTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACg < 7:246475/149‑1 (MQ=255) tttCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAg < 8:367697/115‑1 (MQ=255) tttCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAg > 7:367697/1‑115 (MQ=255) ttCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTa < 7:240375/148‑1 (MQ=255) tCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTAc < 1:381516/148‑1 (MQ=255) gCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCt > 6:213477/1‑149 (MQ=255) cacaAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAg < 4:167992/146‑1 (MQ=255) caAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGtc < 4:41871/149‑1 (MQ=255) aaGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGtct > 4:15618/1‑149 (MQ=255) tAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGa < 5:74826/149‑1 (MQ=255) gggTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAg < 3:15618/148‑1 (MQ=255) gggTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGt < 3:168119/149‑1 (MQ=255) gggTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGt < 2:127699/149‑1 (MQ=255) ggTGTACACAATATTATTTTGCACCTAGATGCTGCACCT‑GGCACTGCCATGGTGCGCACCTGTCAACGCCACC‑CAGGAGAACCGCGATGCCGGTGTGCATTGCAGAACTGACCCTGATGTTCGATCACGTACTGATGCTGTCTCGAGTg < 1:100310/149‑1 (MQ=255) gtgtACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTg > 6:201558/1‑148 (MQ=255) acTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACg > 2:343060/1‑149 (MQ=255) tattatTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCa < 6:321477/149‑1 (MQ=255) tattatTTTGCACCGAGATGCAGCACCA‑GCCACTGCCATGGTGCGCCCCTGTCAACGCCACCAAAGGAAAACCCCGATGCAGGTGAGCAATGCACAACTGACCCAGATCTTCGAGCACGTACTGAAGATGACTCGAGTGGACGAAACg > 1:324654/1‑148 (MQ=255) ttttGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGCCGAAACGCAGAGCg > 8:82085/1‑149 (MQ=255) ttttGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGc < 4:322158/148‑1 (MQ=255) tgttGCACCGAGATGCAGCACCA‑GGCACTGCCATGGGGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGGCTCGAGTGGACGAAACGCAGAGc < 8:376730/146‑1 (MQ=255) tttGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGt > 7:30230/1‑149 (MQ=255) tGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTg < 3:217287/148‑1 (MQ=255) cGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCag > 6:317321/1‑137 (MQ=255) cGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCag < 5:317321/137‑1 (MQ=255) cGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTGGCCGTg > 3:142415/1‑149 (MQ=255) ggcgcaCCATGGCAGTGCC‑TGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTGGCCGTGCTc > 6:208950/4‑146 (MQ=255) gcagcaCCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGa < 8:69707/121‑1 (MQ=255) gcagcaCCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGa > 7:69707/1‑121 (MQ=255) cagcaCCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTGGCCGTGCTCaa > 5:388518/1‑147 (MQ=255) agcaCCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTGGCCGTGCTCAaga < 1:343060/148‑1 (MQ=255) gcaCCATGGCAGTGCC‑TGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTgg > 7:197610/1‑135 (MQ=255) gcaCCATGGCAGTGCC‑TGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTgg < 8:197610/135‑1 (MQ=255) caCCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGtctc > 5:315647/1‑110 (MQ=255) caCCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGtctc < 6:315647/110‑1 (MQ=255) accatggCAGTGCC‑TGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCaga > 7:203533/6‑127 (MQ=255) accatggCAGTGCC‑TGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCaga < 8:203533/122‑1 (MQ=255) ccA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTGGCCGTGCTCAAGAGCCac > 5:180534/1‑149 (MQ=255) ccA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTGGCCGTGCTCAAGAGCCac > 2:40925/1‑149 (MQ=255) tggCAGTGCC‑TGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTGGCCGTGCTCAAGAGCCactac > 1:278593/2‑149 (MQ=255) ggCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGtctc < 1:231049/105‑1 (MQ=255) ggCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGtctc > 2:231049/1‑105 (MQ=255) ccATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTGGCCGTGCTCAAGAGCCACTACTCCGAc < 5:158110/148‑1 (MQ=255) aTGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTGGCCGTGCTCAAGAGCCACTACTc < 1:9902/142‑1 (MQ=255) aTGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTGGCCGTGCTCAAGAGCCACTACTc > 2:9902/1‑142 (MQ=255) aTGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTGGCCGTGCTCAAGAGCCACTACTc < 5:164633/142‑1 (MQ=255) aTGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTGGCCGTGCTCAAGAGCCACTACTc > 6:164633/1‑142 (MQ=255) | GATTGTTACCGTAAATACTGGTCAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACC‑CAGGAGAACCCCGATGCCGGTGAGCAATGCACAACTGACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTGGCCGTGCTCAAGAGCCACTACTCCGAC > NC_002947/4447703‑4447993 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |