| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,907,912 | Δ1 bp | 9.2% | coding (55/1095 nt) | spuE ← | spermidine/putrescine ABC transporter substrate‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,907,912 | 0 | C | . | 9.2% | 239.6 / 17.8 | 76 | coding (55/1095 nt) | spuE | spermidine/putrescine ABC transporter substrate‑binding protein |
| Reads supporting (aligned to +/- strand): ref base C (36/33); new base . (4/3); total (40/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.58e-01 | |||||||||||
TTGCCTTCCAGGGTTTCGTTGGAGTCGAACACATCTTGCACAGGCTTGATGCCCGTGGCTTTCTCGAAGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCC > NC_002947/5907767‑5908056 | ttGCCTTCCAGGGTTTCGTTGGAGTCGAACACATCTTGCACAGGCTTGATGCCCGTGGCTTTCTCGAAGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACAACTTATAGAAG‑TGCCCCGTCGGCGCCGCTTGGACGCT‑GCATTCC‑‑‑‑‑‑‑‑‑aa > 8:322966/1‑148 (MQ=255) ttCCAGGGTTTCGTTGGAGTCGAACACATCTTGCACAGGCTTGATGCCCGTGGCTTTCTCGAAGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGt > 3:376303/1‑147 (MQ=255) cAGGGTTTCGTTGGAGTCGAACACATCTTGCACAGGCTTGATGCCCGTGGCTTTCTCGAAGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGc < 5:104497/149‑1 (MQ=255) cAGGGTTTCGTTGGAGTCGAACACATCTTGCACAGGCTTGATGCCCGTGGCTTTCTCGAAGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGc > 7:202350/1‑149 (MQ=255) aGGGTTTCGTTGGAGTCGAACACATCTTGCACAGGCTTGATGCCCGTGGCTTTCTCGAAGTCCGCGAGTGGGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGc‑c < 7:266985/149‑1 (MQ=255) gggTTTCGTTGGAGTCGAACACATCTTGCACAGGCTTGATGCCCGTGGCTTTCTCGAAGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGc‑cc < 4:376303/149‑1 (MQ=255) tttCGTTGGAGTCGAACACATCTTGCACAGGCTTGATGCCCGTGGCTTTCTCGAAGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCTGGCATG‑C‑‑‑‑‑‑‑‑‑AGCGTcc < 2:371348/141‑2 (MQ=255) tttCGTTGGAGTCGAACACATCTTGCACAGGCTTGATGCCCGTGGCTTTCTCGAAGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCTGGCATG‑C‑‑‑‑‑‑‑‑‑AGCGTcc > 1:371348/1‑140 (MQ=255) gTTGGAGTCGAACACATCTTGCACAGGCTTGATGCCCGTGGCTTTCTCGAAGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCgccag < 7:106974/149‑1 (MQ=255) gTTGGAGTCGAACACATCTTGCACAGGCTTGATGCCCGTGGCTTTCTCGAAGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCgcca < 2:288762/148‑1 (MQ=255) ttGGAGTCGAACACATCTTGCACAGGCTTGATGCCCGTGGCTTTCTCGAAGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGt < 1:114667/134‑1 (MQ=255) ttGGAGTCGAACACATCTTGCACAGGCTTGATGCCCGTGGCTTTCTCGAAGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGt > 2:114667/1‑134 (MQ=255) ttGGAGTCGAACACATCTTGCACAGGCTTGATGCCCGTGGCTTTCTCGAAGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCgccagc > 3:202505/1‑149 (MQ=255) cTTGCACAGGCTTGATGCCCGTGGCTTTCTCGAAGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCg > 1:3936/1‑148 (MQ=255) gCACAGGCTTGATGCCCGTGGCTTTCTCGAAGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGaa < 8:202350/148‑1 (MQ=255) cacaGGCTTGATGCCCGTGGCTTTCTCGAAGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATa < 3:260247/149‑1 (MQ=255) cacaGGCTTGATGCCCGTGGCTTTCTCGAAGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATa < 2:3936/149‑1 (MQ=255) caGGCTTGATGCCCGTGGCTTTCTCGAAGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACa < 6:388249/149‑1 (MQ=255) aGGCTTGATGCCCGTGGCTTTCTCGAAGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATa > 2:330409/1‑146 (MQ=255) gCTTGATGCCCGTGGCTTTCTCGAAGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGa > 1:376291/1‑148 (MQ=255) gCTTGATGCCCGTGGCTTTCTCGAAGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGa < 6:61293/148‑1 (MQ=255) gCTTGATGCCCGTGGCTTTCTCGAAGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGa > 5:61293/1‑148 (MQ=255) gATGCCCGTGGCTTTCTCGAAGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATa < 6:12853/148‑1 (MQ=255) gATGCCCGTGGCTTTCTCGAAGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGAGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATa < 7:322966/148‑1 (MQ=255) cccGTGGCTTTCTCGAAGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATTAAGGCCTTGCg < 3:369511/131‑1 (MQ=255) cccGTGGCTTTCTCGAAGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATTAAGGCCTTGCg > 4:369511/1‑131 (MQ=255) ccGTGGCTTTCTCGAAGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAg > 6:33323/1‑149 (MQ=255) tGGCTTTCTCGAAGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGa > 5:409936/1‑136 (MQ=255) tGGCTTTCTCGAAGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGa < 6:409936/136‑1 (MQ=255) tttCTCGAAGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGt > 2:43755/1‑149 (MQ=255) tcGAAGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCt > 7:106024/1‑148 (MQ=255) cGAAGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGTGGAATACAGAAATAGACAAGTGGGGGTCCTca > 3:90687/1‑149 (MQ=255) aaGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTcac > 7:207498/1‑148 (MQ=255) aGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACaa < 6:252706/149‑1 (MQ=255) gtgtGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCt < 1:43755/149‑1 (MQ=255) gtggtgGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGAGAAGTGGGGGTCCTCACAATCCGTGACTgg > 8:321637/1‑149 (MQ=255) ggtggGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAAt > 2:133620/1‑114 (MQ=255) ggtggGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAAt < 1:133620/114‑1 (MQ=255) ggtggGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTggg > 8:55979/1‑148 (MQ=255) gtggGGCCGATGTAGTCGGACCAGTTATAGAAGTTGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTggg > 1:59697/1‑148 (MQ=255) ggCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGa > 3:245513/1‑149 (MQ=255) gCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTgg > 3:384790/1‑141 (MQ=255) gCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTgg < 4:384790/141‑1 (MQ=255) gCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGa > 5:207068/1‑148 (MQ=255) cGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACaa < 4:202505/149‑1 (MQ=255) aTGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAAtg < 5:33323/149‑1 (MQ=255) tAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAAtgctg > 1:353331/1‑149 (MQ=255) tAGTCGGACAAGTTATATAAG‑TCCACCGTCGGCGCCGCTTGGACGCT‑GCAGGCCTCGCACCCTAGCCCCCGCCTCCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAg < 1:330409/148‑1 (MQ=255) aGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAAt > 1:381075/1‑123 (MQ=255) aGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAAt < 2:381075/123‑1 (MQ=255) tCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGcc < 7:55979/148‑1 (MQ=255) gACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAAtgctgc < 8:326777/144‑1 (MQ=255) gACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAAtgctgc > 7:326777/1‑144 (MQ=255) cAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAAtgctg > 1:1664/1‑140 (MQ=255) cAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAAtgctg < 2:1664/140‑1 (MQ=255) gTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGc > 5:249131/1‑148 (MQ=255) gTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGc > 1:354778/1‑148 (MQ=255) gTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGc > 2:134136/1‑148 (MQ=255) gTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAAGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGc > 4:163319/1‑148 (MQ=255) ttATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCa > 5:319974/1‑148 (MQ=255) ataGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTc > 5:368575/1‑105 (MQ=255) ataGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTc < 6:368575/105‑1 (MQ=255) aaG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCgg > 4:259587/1‑149 (MQ=255) tGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGgcgc < 2:376291/149‑1 (MQ=255) cACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGgcgcg > 2:184927/1‑148 (MQ=255) aCCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCa < 3:361801/149‑1 (MQ=255) tCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCaactt < 4:245513/149‑1 (MQ=255) ggCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGTGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCaacttaa < 4:90687/149‑1 (MQ=255) cctgACGCTGGCATG‑C‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCaacttaact > 2:176519/4‑143 (MQ=255) cctgACGCTGGCATG‑C‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCaacttaact < 1:176519/140‑1 (MQ=255) cctgACGCTGGCATG‑C‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAg > 1:347897/4‑149 (MQ=255) ctgACGCTGGCATG‑C‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGgcgc < 2:344771/129‑1 (MQ=255) ctgACGCTGGCATG‑C‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGgcgc > 1:344771/3‑131 (MQ=255) cT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGAt < 3:259587/149‑1 (MQ=255) cATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATg < 8:106024/147‑1 (MQ=255) cATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGcc > 6:232968/1‑149 (MQ=255) | TTGCCTTCCAGGGTTTCGTTGGAGTCGAACACATCTTGCACAGGCTTGATGCCCGTGGCTTTCTCGAAGTCCGCGAGTGTGGTGGGGCCGATGTAGTCGGACCAGTTATAGAAG‑TGCACCGTCGGCGCCGCTTGGACGCT‑GCATGCC‑‑‑‑‑‑‑‑‑AGCGTCAGGC‑CCGCGCCAGCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCC > NC_002947/5907767‑5908056 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |