| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 557,332 | Δ1 bp | 7.4% | intergenic (+75/‑134) | rpsN → / → rpsH | 30S ribosomal protein S14/30S ribosomal protein S8 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 557,332 | 0 | T | . | 7.4% | 290.8 / 17.3 | 94 | intergenic (+75/‑134) | rpsN/rpsH | 30S ribosomal protein S14/30S ribosomal protein S8 |
| Reads supporting (aligned to +/- strand): ref base T (45/42); new base . (4/3); total (49/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 | |||||||||||
TGGGCCGTAACATGCTGCGTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGAGTAT > NC_002947/557187‑557473 | tGGGCCGTAACATGCTGCGTCAAGCTGCAATGTGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCtata > 7:239830/1‑149 (MQ=255) ccGTAACATGCTGCGTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑ggg > 2:301197/1‑149 (MQ=255) ccGTAACATGCTGCGTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑ggg > 6:362182/1‑149 (MQ=255) cGTAACATGCTGCGTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTTATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑gggg < 4:37774/149‑1 (MQ=255) tgctgcGTCAAGGTGCAATGCGCGGTTACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAATGCGCTGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCC‑ATATAGGGGCTTgttt < 3:102865/149‑1 (MQ=255) cGTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTgtttcgttt > 6:298607/1‑149 (MQ=255) cGTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTgtttcgtt < 2:291439/148‑1 (MQ=255) tCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCt < 3:53798/149‑1 (MQ=255) aaGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGAGCTTgtttcgtttc > 2:397026/1‑146 (MQ=255) aaGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGAGCTTgtttcgtttc < 1:397026/146‑1 (MQ=255) gCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCC‑ATATAGGGGCTTgtttgtt < 8:203704/138‑4 (MQ=255) gCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCC‑ATATAGGGGCTTgtttgtt > 7:203704/1‑135 (MQ=255) cAATGTGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTtgt < 8:239830/148‑1 (MQ=255) cAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTtgt < 6:320115/148‑1 (MQ=255) aTGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTc < 5:298607/149‑1 (MQ=255) tGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTc > 4:274113/1‑148 (MQ=255) tGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCt < 5:362182/149‑1 (MQ=255) ggTGACGTACCAGGTCTGGTCAAGGCCACCTGGTAAACGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GCGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAAt > 7:314564/1‑149 (MQ=255) gTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATg < 3:94223/149‑1 (MQ=255) aCGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGAcc > 6:222016/1‑149 (MQ=255) aCGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGAc < 4:175542/148‑1 (MQ=255) gTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAAt > 8:33661/1‑143 (MQ=255) gTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAAt < 7:33661/143‑1 (MQ=255) gTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCgg > 2:286637/1‑149 (MQ=255) gTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCgg < 7:310529/149‑1 (MQ=255) aCCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCt > 7:229592/1‑149 (MQ=255) aCCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCC‑ATATAGGGGCTTgtttgtt > 2:291562/1‑118 (MQ=39) aCCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCC‑ATATAGGGGCTTgtttgtt < 1:291562/121‑4 (MQ=39) ccAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGAACGGCt > 5:104611/1‑148 (MQ=255) cAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCa > 4:188783/1‑149 (MQ=255) gTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCtt > 5:301288/1‑125 (MQ=255) gTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCtt < 6:301288/125‑1 (MQ=255) gTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCt < 5:222016/149‑1 (MQ=255) tCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCt > 3:84824/1‑148 (MQ=255) tGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAg > 4:198277/1‑149 (MQ=255) gTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGcc > 5:335914/1‑149 (MQ=255) gTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTAGAGAATGCCCGGCTCACCTGCGcc > 2:356896/1‑149 (MQ=255) aaGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCt < 1:62287/123‑1 (MQ=255) aaGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCt > 2:62287/1‑123 (MQ=255) aaGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTgg > 5:170773/1‑149 (MQ=255) aaGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTgg < 4:310727/149‑1 (MQ=255) aGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTggg > 1:190637/1‑149 (MQ=255) aGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTggg > 1:196787/1‑149 (MQ=255) ggCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGt < 3:198277/149‑1 (MQ=255) gCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGtt < 3:16763/149‑1 (MQ=255) ctcctGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTTGAATGACCGGCTCACCTGAGCCTGGGtttt > 6:309714/1‑149 (MQ=255) tcctGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGCCCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGttttt > 3:312516/1‑149 (MQ=255) tcctGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGttttt > 6:109540/1‑149 (MQ=255) ctGGTAATCGCTGCAGTCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCAAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGttttt < 1:301197/147‑1 (MQ=255) ctGGTAATCGCTGCAGGCAAGGCGCGTGTGGAAGGGGAGCAAGCTTCCGACCGGCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTGTAGAATGACCGGCTCTCCTGAGCCTGGGttttt < 5:72109/147‑1 (MQ=255) ctGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGc < 8:373973/149‑1 (MQ=255) ctGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGc > 1:98436/1‑149 (MQ=255) ctGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGc > 3:302991/1‑149 (MQ=255) gTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGcc < 2:98436/147‑1 (MQ=255) aTCGCTGCAGGCAAGGCGCGGGTTGAAGGTGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAACCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCaaa < 3:108517/148‑1 (MQ=255) cGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAg < 6:43038/128‑1 (MQ=255) cGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAg > 5:43038/1‑128 (MQ=255) gCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACACGCCCCTATAT‑GGGGCTTGTTTCTTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGt > 7:217381/1‑149 (MQ=255) cTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGtt > 5:189369/1‑149 (MQ=255) cAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCgg < 8:229592/149‑1 (MQ=255) aGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCggg > 8:20931/1‑149 (MQ=255) aGGCAAGGCGCGGGTGGAACGGGAGCAATCTTCCCACCGCCGGTGACCTTGCCAA‑CAAACAAGCCACTATAT‑GGCGCTTCTTTCGTTTCTGCCTTGTGTCTAGAATGACAGGCTCACCTGAGCCTGGGTATATCCCCAAACGGTTCagg > 4:353793/1‑149 (MQ=255) gCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGggtg > 8:363860/1‑149 (MQ=255) cgcgGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTc < 4:84824/149‑1 (MQ=255) gcgGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCa > 8:202377/1‑149 (MQ=255) gAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCAt < 5:159092/143‑1 (MQ=255) gAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCAt > 6:159092/1‑143 (MQ=255) gAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCg < 5:380063/148‑1 (MQ=255) gggAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCAc < 1:123707/97‑1 (MQ=255) gggAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCAc > 2:123707/1‑97 (MQ=255) ggAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCGTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGc > 1:331424/1‑149 (MQ=255) aGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAAc > 2:400577/1‑118 (MQ=255) aGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAAc < 1:400577/118‑1 (MQ=255) tCTTCCGACCGCCGGTGCCCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACAGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTaataat > 2:21963/1‑149 (MQ=255) tCTTCCGACCGCCGGTGACCTTGCCAACCAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCtaataa > 1:217622/1‑149 (MQ=255) cGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTg < 1:286637/149‑1 (MQ=255) cGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGGCATAGCCGCAAGGCTAATAATTCtt < 6:335914/148‑1 (MQ=255) cGACCGCCGGTGACCATGCCAA‑CAAACAAGGCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACCGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCtt < 8:314564/148‑1 (MQ=255) gACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCTGCAAGGCTAATAATTCTTGt < 7:202377/149‑1 (MQ=255) aCCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTa > 7:37378/1‑149 (MQ=255) aCCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTa > 3:52993/1‑149 (MQ=255) ccgccgGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGATTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTc < 3:16993/143‑1 (MQ=255) gccgGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCa < 4:302991/149‑1 (MQ=255) gccgGTGACCTTGCAAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCa < 6:104611/149‑1 (MQ=255) tGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGc < 6:189369/149‑1 (MQ=255) gCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAg < 2:196787/148‑1 (MQ=255) gCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAg < 2:190637/148‑1 (MQ=255) ccAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATAAGGAGCATCTAGc > 8:182365/1‑148 (MQ=255) acgaaacaaGCCCC‑ATATAGGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCa > 3:248382/4‑149 (MQ=255) aaacaaGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGa < 3:188783/149‑1 (MQ=255) acaaGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGAg > 6:331851/1‑148 (MQ=255) aaGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCa < 1:46185/127‑1 (MQ=255) aaGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCa > 2:46185/1‑127 (MQ=255) aaGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGAGTAt > 3:321567/1‑149 (MQ=255) aaGCCCC‑ATATAGGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGACGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGAGTAt > 3:60562/1‑149 (MQ=255) | TGGGCCGTAACATGCTGCGTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGAGTAT > NC_002947/557187‑557473 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |